Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2039637..2039777 | Replicon | chromosome |
| Accession | NZ_CP071228 | ||
| Organism | Serratia marcescens subsp. marcescens ATCC 13880 substr. Sm_S78_jyu2015 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2039681..2039777 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2039637..2039777 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J0F98_RS09740 | 2034905..2035300 | + | 396 | WP_033640666.1 | RidA family protein | - |
| J0F98_RS09745 | 2035457..2036410 | + | 954 | WP_033641435.1 | prolyl aminopeptidase | - |
| J0F98_RS09750 | 2036442..2036672 | - | 231 | WP_016928156.1 | DNA polymerase III subunit theta | - |
| J0F98_RS09755 | 2037017..2037535 | + | 519 | WP_015377481.1 | non-heme ferritin | - |
| J0F98_RS09760 | 2037828..2038244 | + | 417 | WP_042706245.1 | CopC domain-containing protein YobA | - |
| J0F98_RS09765 | 2038247..2039128 | + | 882 | WP_033640664.1 | copper homeostasis membrane protein CopD | - |
| J0F98_RS09770 | 2039198..2039539 | + | 342 | WP_004940890.1 | YebY family protein | - |
| - | 2039637..2039777 | - | 141 | - | - | Antitoxin |
| - | 2039681..2039777 | + | 97 | - | - | Toxin |
| J0F98_RS09775 | 2040029..2040433 | + | 405 | WP_033640663.1 | hypothetical protein | - |
| J0F98_RS09780 | 2040430..2040648 | - | 219 | WP_033640661.1 | hypothetical protein | - |
| J0F98_RS09785 | 2040723..2041073 | - | 351 | WP_033640660.1 | hypothetical protein | - |
| J0F98_RS09790 | 2041322..2041672 | + | 351 | WP_033640658.1 | DUF4377 domain-containing protein | - |
| J0F98_RS09795 | 2041856..2043055 | + | 1200 | WP_016928134.1 | trans-2-enoyl-CoA reductase family protein | - |
| J0F98_RS09800 | 2043282..2043500 | + | 219 | WP_033640657.1 | hypothetical protein | - |
| J0F98_RS09805 | 2043672..2043977 | + | 306 | WP_016928132.1 | hypothetical protein | - |
| J0F98_RS09810 | 2044026..2044361 | + | 336 | WP_016928131.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T195856 NZ_CP071228:2039681-2039777 [Serratia marcescens subsp. marcescens ATCC 13880]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT195856 NZ_CP071228:c2039777-2039637 [Serratia marcescens subsp. marcescens ATCC 13880]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
