Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2039656..2039796 Replicon chromosome
Accession NZ_CP071204
Organism Serratia marcescens subsp. marcescens ATCC 13880 substr. Sm_S6_jyu2015

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2039700..2039796 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2039656..2039796 (-)

Genomic Context

J0G02_RS09740J0G02_RS09745J0G02_RS09755J0G02_RS09760J0G02_RS09765J0G02_RS09770--J0G02_RS09775J0G02_RS09790J0G02_RS09795J0G02_RS09800J0G02_RS09805J0G02_RS09810J0G02_RS09750--J0G02_RS09780J0G02_RS09785
Location: 2034924..2035319 (396 bp)
Type: Others
Protein ID: WP_033640666.1
Location: 2035476..2036429 (954 bp)
Type: Others
Protein ID: WP_033641435.1
Location: 2037036..2037554 (519 bp)
Type: Others
Protein ID: WP_015377481.1
Location: 2037847..2038263 (417 bp)
Type: Others
Protein ID: WP_042706245.1
Location: 2038266..2039147 (882 bp)
Type: Others
Protein ID: WP_033640664.1
Location: 2039217..2039558 (342 bp)
Type: Others
Protein ID: WP_004940890.1
Location: 2039700..2039796 (97 bp)
Type: Toxin
Protein ID: -
Location: 2040048..2040452 (405 bp)
Type: Others
Protein ID: WP_033640663.1
Location: 2041341..2041691 (351 bp)
Type: Others
Protein ID: WP_033640658.1
Location: 2041875..2043074 (1200 bp)
Type: Others
Protein ID: WP_016928134.1
Location: 2043301..2043519 (219 bp)
Type: Others
Protein ID: WP_033640657.1
Location: 2043691..2043996 (306 bp)
Type: Others
Protein ID: WP_016928132.1
Location: 2044045..2044380 (336 bp)
Type: Others
Protein ID: WP_016928131.1
Location: 2036461..2036691 (231 bp)
Type: Others
Protein ID: WP_016928156.1
Location: 2039656..2039796 (141 bp)
Type: Antitoxin
Protein ID: -
Location: 2040449..2040667 (219 bp)
Type: Others
Protein ID: WP_033640661.1
Location: 2040742..2041092 (351 bp)
Type: Others
Protein ID: WP_033640660.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
J0G02_RS097402034924..2035319+396WP_033640666.1RidA family protein-
J0G02_RS097452035476..2036429+954WP_033641435.1prolyl aminopeptidase-
J0G02_RS097502036461..2036691-231WP_016928156.1DNA polymerase III subunit theta-
J0G02_RS097552037036..2037554+519WP_015377481.1non-heme ferritin-
J0G02_RS097602037847..2038263+417WP_042706245.1CopC domain-containing protein YobA-
J0G02_RS097652038266..2039147+882WP_033640664.1copper homeostasis membrane protein CopD-
J0G02_RS097702039217..2039558+342WP_004940890.1YebY family protein-
-2039656..2039796-141--Antitoxin
-2039700..2039796+97--Toxin
J0G02_RS097752040048..2040452+405WP_033640663.1hypothetical protein-
J0G02_RS097802040449..2040667-219WP_033640661.1hypothetical protein-
J0G02_RS097852040742..2041092-351WP_033640660.1hypothetical protein-
J0G02_RS097902041341..2041691+351WP_033640658.1DUF4377 domain-containing protein-
J0G02_RS097952041875..2043074+1200WP_016928134.1trans-2-enoyl-CoA reductase family protein-
J0G02_RS098002043301..2043519+219WP_033640657.1hypothetical protein-
J0G02_RS098052043691..2043996+306WP_016928132.1hypothetical protein-
J0G02_RS098102044045..2044380+336WP_016928131.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 97 bp

>T195664 NZ_CP071204:2039700-2039796 [Serratia marcescens subsp. marcescens ATCC 13880]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT

Antitoxin


Download         Length: 141 bp

>AT195664 NZ_CP071204:c2039796-2039656 [Serratia marcescens subsp. marcescens ATCC 13880]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References