Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2723133..2723287 | Replicon | chromosome |
| Accession | NZ_CP071178 | ||
| Organism | Enterobacter kobei strain CDL29 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2723149..2723252 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2723133..2723287 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JZY03_RS12830 (JZY03_12805) | 2719409..2720851 | + | 1443 | WP_045134186.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JZY03_RS12835 (JZY03_12810) | 2720958..2721197 | + | 240 | WP_008500472.1 | YebV family protein | - |
| JZY03_RS12840 (JZY03_12815) | 2721232..2721876 | - | 645 | WP_045134187.1 | protein-serine/threonine phosphatase | - |
| JZY03_RS12845 (JZY03_12820) | 2722044..2722985 | + | 942 | WP_045134188.1 | VirK/YbjX family protein | - |
| - | 2723133..2723287 | + | 155 | - | - | Antitoxin |
| - | 2723149..2723252 | - | 104 | - | - | Toxin |
| JZY03_RS12850 (JZY03_12825) | 2723391..2723729 | - | 339 | WP_014884299.1 | YebY family protein | - |
| JZY03_RS12855 (JZY03_12830) | 2723746..2724615 | - | 870 | WP_045134189.1 | copper homeostasis membrane protein CopD | - |
| JZY03_RS12860 (JZY03_12835) | 2724617..2724988 | - | 372 | WP_023338431.1 | CopC domain-containing protein YobA | - |
| JZY03_RS12865 (JZY03_12840) | 2725126..2725356 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| JZY03_RS12870 (JZY03_12845) | 2725467..2726117 | + | 651 | WP_014884302.1 | carbon-nitrogen hydrolase family protein | - |
| JZY03_RS12875 (JZY03_12850) | 2726142..2726804 | + | 663 | WP_014884303.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T195517 NZ_CP071178:c2723252-2723149 [Enterobacter kobei]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 155 bp
>AT195517 NZ_CP071178:2723133-2723287 [Enterobacter kobei]
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TGTCTTTCATACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTG
CGCTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
