Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1714570..1714715 | Replicon | chromosome |
| Accession | NZ_CP071150 | ||
| Organism | Klebsiella pneumoniae strain IRQBAS102c | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1714606..1714708 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1714570..1714715 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JZ790_RS08315 | 1709700..1711760 | + | 2061 | WP_130947155.1 | oligopeptidase B | - |
| JZ790_RS08320 | 1711764..1712423 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JZ790_RS08325 | 1712502..1712732 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JZ790_RS08330 | 1712845..1713219 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JZ790_RS08335 | 1713223..1714092 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| JZ790_RS08340 | 1714109..1714447 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1714570..1714715 | - | 146 | - | - | Antitoxin |
| - | 1714606..1714708 | + | 103 | - | - | Toxin |
| JZ790_RS08345 | 1715083..1715226 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JZ790_RS08350 | 1715331..1716299 | - | 969 | WP_206552288.1 | DUF535 family protein | - |
| JZ790_RS08355 | 1716456..1717109 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| JZ790_RS08360 | 1717106..1717297 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JZ790_RS08365 | 1717395..1717634 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JZ790_RS08370 | 1717750..1719183 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T195478 NZ_CP071150:1714606-1714708 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT195478 NZ_CP071150:c1714715-1714570 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
