195340

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1-PHD
Location 718024..718688 Replicon chromosome
Accession NZ_CP071127
Organism Mycobacterium tuberculosis strain 120/26CAO

Toxin (Protein)


Gene name vapC Uniprot ID P96917
Locus tag JY387_RS03270 Protein ID WP_003403246.1
Coordinates 718281..718688 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WF18
Locus tag JY387_RS03265 Protein ID WP_003403244.1
Coordinates 718024..718284 (+) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JY387_RS03240 714201..715265 + 1065 WP_003898532.1 hypothetical protein -
JY387_RS03245 715369..716316 + 948 WP_003403232.1 DUF732 domain-containing protein -
JY387_RS03250 716409..716663 + 255 WP_003403235.1 type II toxin-antitoxin system antitoxin VapB30 -
JY387_RS03255 716663..717058 + 396 WP_003403236.1 type II toxin-antitoxin system toxin ribonuclease C30 -
JY387_RS03260 717152..717892 - 741 WP_003403239.1 TVP38/TMEM64 family protein -
JY387_RS03265 718024..718284 + 261 WP_003403244.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
JY387_RS03270 718281..718688 + 408 WP_003403246.1 type II toxin-antitoxin system VapC family toxin Toxin
JY387_RS03275 718760..719911 - 1152 WP_003403248.1 FIST C-terminal domain-containing protein -
JY387_RS03280 720004..721731 - 1728 WP_206338113.1 exodeoxyribonuclease V subunit alpha -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(9-125)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-57)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 14376.37 Da        Isoelectric Point: 4.3568

>T195340 WP_003403246.1 NZ_CP071127:718281-718688 [Mycobacterium tuberculosis]
VSTTPAAGVLDTSVFIATESGRQLDEALIPDRVATTVVTLAELRVGVLAAATTDIRAQRLATLESVADMETLPVDDDAAR
MWARLRIHLAESGRRVRINDLWIAAVAASRALPVITQDDDFAALDGAASVEIIRV

Download         Length: 408 bp

>T195340 NZ_CP094555:c46460-46140 [Acinetobacter sp. YH12068_T]
ATGTTATTCATTGAAACCAGTATCTTTACCAAGCAAATCAAAGACCTTGTATCTGATGAGGAATATCGTCAACTTCAACA
AGATCTATTGGTTCAGCCAGATAAAGGTGACTTAATCAAGAATGGCGGTGGCATTCGAAAAGTACGTTGTGCTCAAGGTA
ATAAAGGCAAAAGTGGCGGTATCAGAGTAATTTACTATTGGGTAAATGAGGATGATCAAATCTTTTTCTTGGTGGCTTAT
CCAAAATCTGTAAAAGATAATCTAACGGATAAAGAAACCGCCATTCTGCGCCAACTCGTGAAGGAGCAATTTCATGGATA
A

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9492.84 Da        Isoelectric Point: 11.9108

>AT195340 WP_003403244.1 NZ_CP071127:718024-718284 [Mycobacterium tuberculosis]
MSEVASRELRNDTAGVLRRVRAGEDVTITVSGRPVAVLTPVRPRRRRWLSKTEFLSRLRGAQADPGLRNDLAVLAGDTTE
DLGPIR

Download         Length: 261 bp

>AT195340 NZ_CP094555:c46147-45875 [Acinetobacter sp. YH12068_T]
ATGGATAACAACTTATTTGATGACTTAGTTGCTTCGATTAAAGAAGCAGGAGCAATCAAGCGCAAAGAGATCCAAGCTAG
TCGAACGACCGAACTTGAATTACCAGATATTAAGGAAGTGCGAGAAAAAACTGGTTTAAGTCAAAGCGAATTTGCAGCAC
GTCTCCACATTAGCCATCGTACTCTGCAAAACTGGGAACAAGGCCGACGCTATCCAACAGGACCAGCAGCAACATTGATT
CGAATTTTAGATGCACATCCTAGTCTTATTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 3DBO

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4BSE4

References