Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2150245..2150390 | Replicon | chromosome |
| Accession | NZ_CP071086 | ||
| Organism | Klebsiella pneumoniae strain 3347689I | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2150281..2150383 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2150245..2150390 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JY394_RS10680 (JY394_10685) | 2145375..2147435 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JY394_RS10685 (JY394_10690) | 2147439..2148098 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JY394_RS10690 (JY394_10695) | 2148177..2148407 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JY394_RS10695 (JY394_10700) | 2148520..2148894 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JY394_RS10700 (JY394_10705) | 2148898..2149767 | + | 870 | WP_019725445.1 | copper homeostasis membrane protein CopD | - |
| JY394_RS10705 (JY394_10710) | 2149784..2150122 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2150245..2150390 | - | 146 | - | - | Antitoxin |
| - | 2150281..2150383 | + | 103 | - | - | Toxin |
| JY394_RS10710 (JY394_10715) | 2150758..2150901 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JY394_RS10715 (JY394_10720) | 2151006..2151974 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JY394_RS10720 (JY394_10725) | 2152131..2152784 | + | 654 | WP_019725444.1 | protein-serine/threonine phosphatase | - |
| JY394_RS10725 (JY394_10730) | 2152781..2152972 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JY394_RS10730 (JY394_10735) | 2153070..2153309 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JY394_RS10735 (JY394_10740) | 2153425..2154858 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T195261 NZ_CP071086:2150281-2150383 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT195261 NZ_CP071086:c2150390-2150245 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
