Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2791738..2792009 | Replicon | chromosome |
| Accession | NZ_CP071073 | ||
| Organism | Escherichia coli strain 3347558 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2791776..2791879 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2791738..2792009 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JY392_RS13695 | 2788895..2790334 | + | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JY392_RS13700 | 2790452..2790688 | + | 237 | WP_001295499.1 | YebV family protein | - |
| JY392_RS13705 | 2790793..2790984 | + | 192 | WP_001296140.1 | YebW family protein | - |
| JY392_RS13710 | 2790985..2791641 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2791738..2792009 | + | 272 | - | - | Antitoxin |
| - | 2791776..2791879 | - | 104 | - | - | Toxin |
| JY392_RS13715 | 2792037..2792378 | - | 342 | WP_000976481.1 | YebY family protein | - |
| JY392_RS13720 | 2792391..2793263 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| JY392_RS13725 | 2793267..2793641 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| JY392_RS13730 | 2793780..2794010 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JY392_RS13735 | 2794112..2794768 | + | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JY392_RS13740 | 2794792..2795454 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2775899..2815796 | 39897 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T195217 NZ_CP071073:c2791879-2791776 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT195217 NZ_CP071073:2791738-2792009 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
