Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2737908..2738051 | Replicon | chromosome |
| Accession | NZ_CP071070 | ||
| Organism | Citrobacter sedlakii strain 3347689II | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2737913..2738016 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2737908..2738051 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JY391_RS13110 (JY391_13110) | 2734735..2735436 | - | 702 | WP_229264050.1 | molecular chaperone | - |
| JY391_RS13115 (JY391_13115) | 2735508..2736065 | - | 558 | WP_229264051.1 | fimbrial protein | - |
| JY391_RS13120 (JY391_13120) | 2737068..2737721 | + | 654 | WP_042287837.1 | LuxR C-terminal-related transcriptional regulator | - |
| - | 2737908..2738051 | + | 144 | - | - | Antitoxin |
| - | 2737913..2738016 | - | 104 | - | - | Toxin |
| JY391_RS13125 (JY391_13125) | 2738172..2738510 | - | 339 | WP_211934429.1 | YebY family protein | - |
| JY391_RS13130 (JY391_13130) | 2738527..2739399 | - | 873 | WP_211934430.1 | copper homeostasis membrane protein CopD | - |
| JY391_RS13135 (JY391_13135) | 2739402..2739764 | - | 363 | WP_211934431.1 | CopC domain-containing protein YobA | - |
| JY391_RS13140 (JY391_13140) | 2739902..2740132 | + | 231 | WP_042287849.1 | DNA polymerase III subunit theta | - |
| JY391_RS13145 (JY391_13145) | 2740241..2740897 | + | 657 | WP_211934432.1 | carbon-nitrogen hydrolase family protein | - |
| JY391_RS13150 (JY391_13150) | 2740921..2741583 | + | 663 | WP_211934433.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T195186 NZ_CP071070:c2738016-2737913 [Citrobacter sedlakii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT195186 NZ_CP071070:2737908-2738051 [Citrobacter sedlakii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGATGACGACGCCAGGTTTTCCAGT
