Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2859081..2859224 | Replicon | chromosome |
| Accession | NZ_CP071063 | ||
| Organism | Enterobacter mori strain 08-091 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2859086..2859189 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2859081..2859224 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JY395_RS13415 (JY395_13405) | 2855354..2856796 | + | 1443 | WP_215229983.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JY395_RS13420 (JY395_13410) | 2856901..2857140 | + | 240 | WP_042717979.1 | YebV family protein | - |
| JY395_RS13425 (JY395_13415) | 2857175..2857813 | - | 639 | WP_215229984.1 | protein-serine/threonine phosphatase | - |
| JY395_RS13430 (JY395_13420) | 2857981..2858961 | + | 981 | WP_215229985.1 | VirK/YbjX family protein | - |
| - | 2859081..2859224 | + | 144 | - | - | Antitoxin |
| - | 2859086..2859189 | - | 104 | - | - | Toxin |
| JY395_RS13435 (JY395_13425) | 2859328..2859666 | - | 339 | WP_010432621.1 | YebY family protein | - |
| JY395_RS13440 (JY395_13430) | 2859683..2860552 | - | 870 | WP_215229986.1 | copper homeostasis membrane protein CopD | - |
| JY395_RS13445 (JY395_13435) | 2860554..2860925 | - | 372 | WP_215231147.1 | CopC domain-containing protein YobA | - |
| JY395_RS13450 (JY395_13440) | 2861063..2861293 | + | 231 | WP_010432616.1 | DNA polymerase III subunit theta | - |
| JY395_RS13455 (JY395_13445) | 2861404..2862054 | + | 651 | WP_215229987.1 | carbon-nitrogen hydrolase family protein | - |
| JY395_RS13460 (JY395_13450) | 2862079..2862741 | + | 663 | WP_215229988.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T195168 NZ_CP071063:c2859189-2859086 [Enterobacter mori]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT195168 NZ_CP071063:2859081-2859224 [Enterobacter mori]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
