Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2293199..2293281 Replicon chromosome
Accession NZ_CP071062
Organism Dickeya solani strain IPO2019

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2293201..2293281 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2293199..2293281 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JYR06_RS10185 2289063..2290160 - 1098 WP_022633455.1 HDOD domain-containing protein -
JYR06_RS10190 2290151..2291266 - 1116 WP_022633456.1 sensor histidine kinase -
JYR06_RS10195 2291259..2292383 - 1125 WP_022633457.1 FIST C-terminal domain-containing protein -
JYR06_RS10200 2292750..2292980 + 231 WP_198560147.1 aminopeptidase -
- 2293199..2293281 + 83 - - Antitoxin
- 2293201..2293281 - 81 - - Toxin
JYR06_RS10205 2293451..2293789 - 339 WP_022633458.1 YebY family protein -
JYR06_RS10210 2294308..2294751 + 444 WP_022633459.1 hypothetical protein -
JYR06_RS10215 2295103..2295351 + 249 WP_022633460.1 GlsB/YeaQ/YmgE family stress response membrane protein -
JYR06_RS10220 2295468..2297210 - 1743 WP_022633461.1 ABC transporter permease subunit -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 2286945..2295351 8406


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 81 bp

>T195152 NZ_CP071062:c2293281-2293201 [Dickeya solani]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T

Antitoxin


Download         Length: 83 bp

>AT195152 NZ_CP071062:2293199-2293281 [Dickeya solani]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References