Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2708234..2708435 | Replicon | chromosome |
| Accession | NZ_CP071023 | ||
| Organism | Enterobacter hormaechei strain RIVM_C012369 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2708239..2708342 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2708234..2708435 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JQL72_RS12945 | 2704502..2705944 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JQL72_RS12950 | 2706049..2706288 | + | 240 | WP_006811010.1 | YebV family protein | - |
| JQL72_RS12955 | 2706323..2706967 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| JQL72_RS12960 | 2707135..2708115 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| JQL72_RS12965 | 2708161..2708358 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2708234..2708435 | + | 202 | - | - | Antitoxin |
| - | 2708239..2708342 | - | 104 | - | - | Toxin |
| JQL72_RS12970 | 2708484..2708822 | - | 339 | WP_022648464.1 | YebY family protein | - |
| JQL72_RS12975 | 2708839..2709708 | - | 870 | WP_022648465.1 | copper homeostasis membrane protein CopD | - |
| JQL72_RS12980 | 2709710..2710081 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| JQL72_RS12985 | 2710219..2710449 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| JQL72_RS12990 | 2710561..2711199 | + | 639 | WP_022648467.1 | carbon-nitrogen hydrolase family protein | - |
| JQL72_RS12995 | 2711224..2711886 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T195085 NZ_CP071023:c2708342-2708239 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT195085 NZ_CP071023:2708234-2708435 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
