Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2708243..2708444 | Replicon | chromosome |
| Accession | NZ_CP071011 | ||
| Organism | Enterobacter hormaechei strain RIVM_C034177 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2708248..2708351 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2708243..2708444 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JQL78_RS12945 | 2704511..2705953 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JQL78_RS12950 | 2706058..2706297 | + | 240 | WP_006811010.1 | YebV family protein | - |
| JQL78_RS12955 | 2706332..2706976 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| JQL78_RS12960 | 2707144..2708124 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| JQL78_RS12965 | 2708170..2708367 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2708243..2708444 | + | 202 | - | - | Antitoxin |
| - | 2708248..2708351 | - | 104 | - | - | Toxin |
| JQL78_RS12970 | 2708493..2708831 | - | 339 | WP_022648464.1 | YebY family protein | - |
| JQL78_RS12975 | 2708848..2709717 | - | 870 | WP_022648465.1 | copper homeostasis membrane protein CopD | - |
| JQL78_RS12980 | 2709719..2710090 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| JQL78_RS12985 | 2710228..2710458 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| JQL78_RS12990 | 2710570..2711208 | + | 639 | WP_022648467.1 | carbon-nitrogen hydrolase family protein | - |
| JQL78_RS12995 | 2711233..2711895 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T194989 NZ_CP071011:c2708351-2708248 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT194989 NZ_CP071011:2708243-2708444 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
