Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 5023882..5024401 Replicon chromosome
Accession NZ_CP070982
Organism Pseudomonas entomophila strain Small

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag JYG34_RS21965 Protein ID WP_213658317.1
Coordinates 5024111..5024401 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag JYG34_RS21960 Protein ID WP_213658316.1
Coordinates 5023882..5024121 (+) Length 80 a.a.

Genomic Context

JYG34_RS21955JYG34_RS21960JYG34_RS21965JYG34_RS21975JYG34_RS21980JYG34_RS21995JYG34_RS21945JYG34_RS21950JYG34_RS21970JYG34_RS21985JYG34_RS21990
Location: 5022303..5023790 (1488 bp)
Type: Others
Protein ID: WP_213658315.1
Location: 5023882..5024121 (240 bp)
Type: Antitoxin
Protein ID: WP_213658316.1
Location: 5024111..5024401 (291 bp)
Type: Toxin
Protein ID: WP_213658317.1
Location: 5025413..5026453 (1041 bp)
Type: Others
Protein ID: WP_213658319.1
Location: 5026598..5026993 (396 bp)
Type: Others
Protein ID: WP_213658320.1
Location: 5028755..5029351 (597 bp)
Type: Others
Protein ID: WP_213658323.1
Location: 5019005..5019529 (525 bp)
Type: Others
Protein ID: WP_213658313.1
Location: 5019693..5021981 (2289 bp)
Type: Others
Protein ID: WP_213658314.1
Location: 5024404..5025177 (774 bp)
Type: Others
Protein ID: WP_213658318.1
Location: 5027019..5027504 (486 bp)
Type: Others
Protein ID: WP_213658321.1
Location: 5027485..5028552 (1068 bp)
Type: Others
Protein ID: WP_213658322.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
JYG34_RS21945 (JYG34_21945)5019005..5019529-525WP_213658313.1histidine phosphatase family protein-
JYG34_RS21950 (JYG34_21950)5019693..5021981-2289WP_213658314.15-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase-
JYG34_RS21955 (JYG34_21955)5022303..5023790+1488WP_213658315.1methylenetetrahydrofolate reductase C-terminal domain-containing protein-
JYG34_RS21960 (JYG34_21960)5023882..5024121+240WP_213658316.1type II toxin-antitoxin system RelB/DinJ family antitoxinAntitoxin
JYG34_RS21965 (JYG34_21965)5024111..5024401+291WP_213658317.1type II toxin-antitoxin system RelE/ParE family toxinToxin
JYG34_RS21970 (JYG34_21970)5024404..5025177-774WP_213658318.1carbon-nitrogen hydrolase family protein-
JYG34_RS21975 (JYG34_21975)5025413..5026453+1041WP_213658319.1DMT family transporter-
JYG34_RS21980 (JYG34_21980)5026598..5026993+396WP_213658320.1hypothetical protein-
JYG34_RS21985 (JYG34_21985)5027019..5027504-486WP_213658321.1PIN domain-containing protein-
JYG34_RS21990 (JYG34_21990)5027485..5028552-1068WP_213658322.1XRE family transcriptional regulator-
JYG34_RS21995 (JYG34_21995)5028755..5029351+597WP_213658323.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-81)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-64)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11345.25 Da        Isoelectric Point: 10.3672

>T194909 WP_213658317.1 NZ_CP070982:5024111-5024401 [Pseudomonas entomophila]
MTYNLDFDARALKEWQKLGDTIRQQLKKKLATVLLNPRVEANRLHGFADCYKIKLRSSGYRMIYQVIDQEVVVFVIAVDK
RERDQVYRKAAERLAK

Download         Length: 291 bp

>T194909 NZ_CP094178:18330-19091 [Helicobacter pylori]
ATGGAAACTAAAGAAGAAGATAAAGATAAAAAGCTAGAAAAAATTATTGTATTGCTGTGCGAAGAGGGGGATTTGTCTAG
CCAAAAAGATCAAATCATCAAAGATCTCAAAGAAATCTATAAAGGAGAATACAAGCATAAATACTCAAAAATCACAACTA
TTATTTTAAATTCCACAAGGGATAAAGAGCAAGCCTTTATGATGCTCACACAAAATATAAAGACGCTCAAAGAGATTCAA
GATAATAAAGAAGTTGAAAGCATTAAACCAAAACTAGAAAAGCTTTATGATCACATGAATTTAGAGTGTATCAGACTGCA
AGATTTTGATGAGAAAATGAGTAGAGTTAAAGATATTTCTATAAGGTTAGATAATCTAAATAAAAACTATAAAAAATTAA
GCGAAGAATTGAATAAGCAGCAAACGCAATACATAACAATTTTAGGTATTTTTGCCTCTATTGTTTTAACATTTGTTGGG
GGATTGGCGTTTTCCACTTCTGTTTTATCAAATATTGACAAAGCGAACGCCTATCGTTTGGTTTTTGTTATGGCTTTTAT
AGCTTTATTTTTTGGGAATATTTTGTATCTGCTTTTTTCTTTTTTATCAAAAATATCCTTATCAAAAGAGAAAAAAGATA
AACAAGAAAATTTTTTCAAAAAACCTATTTTTTGGTTTAATCTAATGGTTACAATCCTATTTGTGATTGGTTTTGTGGGA
GAATTGCATATAATACAAAGATTAGCTTCTAAATATTTTTAA

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 9062.50 Da        Isoelectric Point: 4.8279

>AT194909 WP_213658316.1 NZ_CP070982:5023882-5024121 [Pseudomonas entomophila]
MASINVRIDDELKVRAYRELEKLGVTPSELMRQALQYVAERGQLPFKPVLLTEEDEALLATVRERLAAPQRIRVTLDDL

Download         Length: 240 bp

>AT194909 NZ_CP094178:17903-18340 [Helicobacter pylori]
ATGGTCAATGCTTTGGAACTAGCAAAATATATTCTTAAGCGTTCAAACAAAGAATTGAGCAACTTAGAATTGCAAAAAAC
TTTGTATTTCACAGAGCTTGACTATATCAAAAAGTTTGACAAACACCTAGTTTCTGATGATTTTGAAGCTTGGAAATATG
GGCCTGTTGCAAGGGAAGTGTATTATGAATATCGCAATTATGGTGCCAATTCCATTGACAAACCCAAAGAAGAAACGCTC
TCACAAAATCTTAGAAAAGATGAATTGGAAACCATCAACTACTCCATAGAAAAATGCAACGAAAAATCCTATTGGGATTT
AGTGAAAGAGAGTCATAAAGAAGATGGTGCTTGGCATAAAAGCTTCAAAGAAGATAGAAAAGAAGTCATTAGCAAAGATT
TGATCAAACAAGAAGCAAAACAAGCAAATGGAAACTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References