Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2152883..2153028 | Replicon | chromosome |
| Accession | NZ_CP070970 | ||
| Organism | Klebsiella pneumoniae strain JS706 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2152890..2152992 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2152883..2153028 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JXZ99_RS10780 | 2148415..2149848 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JXZ99_RS10785 | 2149964..2150203 | + | 240 | WP_002911393.1 | YebV family protein | - |
| JXZ99_RS10790 | 2150301..2150492 | + | 192 | WP_002911395.1 | YebW family protein | - |
| JXZ99_RS10795 | 2150489..2151142 | - | 654 | WP_014343242.1 | protein-serine/threonine phosphatase | - |
| JXZ99_RS10800 | 2151299..2152267 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JXZ99_RS10805 | 2152372..2152515 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 2152883..2153028 | + | 146 | - | - | Antitoxin |
| - | 2152890..2152992 | - | 103 | - | - | Toxin |
| JXZ99_RS10810 | 2153151..2153489 | - | 339 | WP_002911404.1 | YebY family protein | - |
| JXZ99_RS10815 | 2153506..2154375 | - | 870 | WP_014343243.1 | copper homeostasis membrane protein CopD | - |
| JXZ99_RS10820 | 2154379..2154753 | - | 375 | WP_014343244.1 | CopC domain-containing protein YobA | - |
| JXZ99_RS10825 | 2154866..2155096 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JXZ99_RS10830 | 2155175..2155834 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JXZ99_RS10835 | 2155838..2157898 | - | 2061 | WP_019705169.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T194856 NZ_CP070970:c2152992-2152890 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT194856 NZ_CP070970:2152883-2153028 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
