Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1640788..1641059 | Replicon | chromosome |
| Accession | NZ_CP070962 | ||
| Organism | Escherichia coli strain K-12 J53 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1640918..1641021 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1640788..1641059 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JTR57_RS07915 | 1637343..1638005 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JTR57_RS07920 | 1638029..1638685 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JTR57_RS07925 | 1638787..1639017 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JTR57_RS07930 | 1639156..1639530 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JTR57_RS07935 | 1639534..1640406 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| JTR57_RS07940 | 1640419..1640760 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1640788..1641059 | - | 272 | - | - | Antitoxin |
| - | 1640918..1641021 | + | 104 | - | - | Toxin |
| JTR57_RS07945 | 1641156..1641812 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JTR57_RS07950 | 1641813..1642004 | - | 192 | WP_000457842.1 | YebW family protein | - |
| JTR57_RS07955 | 1642109..1642345 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JTR57_RS07960 | 1642463..1643902 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T194808 NZ_CP070962:1640918-1641021 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT194808 NZ_CP070962:c1641059-1640788 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
