Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2594986..2595253 | Replicon | chromosome |
| Accession | NZ_CP070954 | ||
| Organism | Escherichia fergusonii strain EF44 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2595024..2595127 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2594986..2595253 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JYG65_RS12360 | 2592143..2593582 | + | 1440 | WP_223666645.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JYG65_RS12365 | 2593701..2593937 | + | 237 | WP_001295499.1 | YebV family protein | - |
| JYG65_RS12370 | 2594042..2594233 | + | 192 | WP_001296140.1 | YebW family protein | - |
| JYG65_RS12375 | 2594234..2594890 | - | 657 | WP_223666644.1 | protein-serine/threonine phosphatase | - |
| - | 2594986..2595253 | + | 268 | - | - | Antitoxin |
| - | 2595024..2595127 | - | 104 | - | - | Toxin |
| JYG65_RS12380 | 2595283..2595624 | - | 342 | WP_000976177.1 | YebY family protein | - |
| JYG65_RS12385 | 2595636..2596508 | - | 873 | WP_181198936.1 | copper homeostasis membrane protein CopD | - |
| JYG65_RS12390 | 2596511..2596885 | - | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| JYG65_RS12395 | 2597024..2597254 | + | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| JYG65_RS12400 | 2597361..2598017 | + | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| JYG65_RS12405 | 2598041..2598703 | + | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T194763 NZ_CP070954:c2595127-2595024 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 268 bp
>AT194763 NZ_CP070954:2594986-2595253 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
