Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1916093..1916361 | Replicon | chromosome |
| Accession | NZ_CP070951 | ||
| Organism | Escherichia fergusonii strain EF31 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1916220..1916323 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1916093..1916361 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JW961_RS09065 | 1912643..1913305 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| JW961_RS09070 | 1913329..1913985 | - | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| JW961_RS09075 | 1914092..1914322 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| JW961_RS09080 | 1914461..1914835 | + | 375 | WP_223662400.1 | CopC domain-containing protein YobA | - |
| JW961_RS09085 | 1914838..1915710 | + | 873 | WP_223662402.1 | copper homeostasis membrane protein CopD | - |
| JW961_RS09090 | 1915722..1916063 | + | 342 | WP_000976176.1 | YebY family protein | - |
| - | 1916093..1916361 | - | 269 | - | - | Antitoxin |
| - | 1916220..1916323 | + | 104 | - | - | Toxin |
| JW961_RS09095 | 1916457..1917113 | + | 657 | WP_000812708.1 | protein-serine/threonine phosphatase | - |
| JW961_RS09100 | 1917114..1917305 | - | 192 | WP_002431587.1 | YebW family protein | - |
| JW961_RS09105 | 1917410..1917646 | - | 237 | WP_002431586.1 | YebV family protein | - |
| JW961_RS09110 | 1917765..1919204 | - | 1440 | WP_223662404.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T194732 NZ_CP070951:1916220-1916323 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT194732 NZ_CP070951:c1916361-1916093 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
