Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1996989..1997260 | Replicon | chromosome |
| Accession | NZ_CP070920 | ||
| Organism | Escherichia coli strain 40EC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1997119..1997222 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1996989..1997260 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JR909_RS09610 | 1993973..1994209 | - | 237 | Protein_1874 | exodeoxyribonuclease X | - |
| JR909_RS09615 | 1994230..1994886 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JR909_RS09620 | 1994988..1995218 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JR909_RS09625 | 1995357..1995731 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| JR909_RS09630 | 1995735..1996607 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| JR909_RS09635 | 1996620..1996961 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1996989..1997260 | - | 272 | - | - | Antitoxin |
| - | 1997119..1997222 | + | 104 | - | - | Toxin |
| JR909_RS09640 | 1997357..1998013 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| JR909_RS09645 | 1998014..1998205 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JR909_RS09650 | 1998310..1998546 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JR909_RS09655 | 1998664..2000103 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T194671 NZ_CP070920:1997119-1997222 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT194671 NZ_CP070920:c1997260-1996989 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
