Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2041388..2041659 | Replicon | chromosome |
| Accession | NZ_CP070906 | ||
| Organism | Escherichia coli strain 88COLEC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2041518..2041621 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2041388..2041659 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JR901_RS09680 | 2037943..2038605 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JR901_RS09685 | 2038629..2039285 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| JR901_RS09690 | 2039387..2039617 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JR901_RS09695 | 2039756..2040130 | + | 375 | WP_021556896.1 | CopC domain-containing protein YobA | - |
| JR901_RS09700 | 2040134..2041006 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| JR901_RS09705 | 2041019..2041360 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2041388..2041659 | - | 272 | - | - | Antitoxin |
| - | 2041518..2041621 | + | 104 | - | - | Toxin |
| JR901_RS09710 | 2041756..2042412 | + | 657 | WP_021556895.1 | protein-serine/threonine phosphatase | - |
| JR901_RS09715 | 2042413..2042604 | - | 192 | WP_001313035.1 | YebW family protein | - |
| JR901_RS09720 | 2042709..2042945 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JR901_RS09725 | 2043063..2044502 | - | 1440 | WP_024227172.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T194622 NZ_CP070906:2041518-2041621 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT194622 NZ_CP070906:c2041659-2041388 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
