Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2029853..2030124 | Replicon | chromosome |
| Accession | NZ_CP070902 | ||
| Organism | Escherichia coli strain 99COLEC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2029983..2030086 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2029853..2030124 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JR895_RS09650 | 2026409..2027071 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JR895_RS09655 | 2027095..2027751 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JR895_RS09660 | 2027853..2028083 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JR895_RS09665 | 2028222..2028596 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| JR895_RS09670 | 2028600..2029472 | + | 873 | WP_000879297.1 | copper homeostasis membrane protein CopD | - |
| JR895_RS09675 | 2029485..2029826 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2029853..2030124 | - | 272 | - | - | Antitoxin |
| - | 2029983..2030086 | + | 104 | - | - | Toxin |
| JR895_RS09680 | 2030221..2030877 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JR895_RS09685 | 2030878..2031069 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JR895_RS09690 | 2031174..2031410 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JR895_RS09695 | 2031528..2032967 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T194601 NZ_CP070902:2029983-2030086 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT194601 NZ_CP070902:c2030124-2029853 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
