Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3169948..3170215 | Replicon | chromosome |
| Accession | NZ_CP070873 | ||
| Organism | Escherichia fergusonii strain EF91 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3170074..3170177 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3169948..3170215 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JW972_RS15030 | 3166498..3167160 | - | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
| JW972_RS15035 | 3167184..3167840 | - | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| JW972_RS15040 | 3167947..3168177 | - | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| JW972_RS15045 | 3168316..3168690 | + | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| JW972_RS15050 | 3168693..3169565 | + | 873 | WP_181198936.1 | copper homeostasis membrane protein CopD | - |
| JW972_RS15055 | 3169577..3169918 | + | 342 | WP_000976177.1 | YebY family protein | - |
| - | 3169948..3170215 | - | 268 | - | - | Antitoxin |
| - | 3170074..3170177 | + | 104 | - | - | Toxin |
| JW972_RS15060 | 3170311..3170967 | + | 657 | WP_223666644.1 | protein-serine/threonine phosphatase | - |
| JW972_RS15065 | 3170968..3171159 | - | 192 | WP_001296140.1 | YebW family protein | - |
| JW972_RS15070 | 3171264..3171500 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JW972_RS15075 | 3171619..3173058 | - | 1440 | WP_223666645.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T194536 NZ_CP070873:3170074-3170177 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 268 bp
>AT194536 NZ_CP070873:c3170215-3169948 [Escherichia fergusonii]
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATTTTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCGT
TCTGGTGAAAGAACTGAGGCGGTTTTTT
