Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | spoIISABC/SpoIISA-SpoIISB |
| Location | 1359949..1360865 | Replicon | chromosome |
| Accession | NZ_CP070844 | ||
| Organism | Bacillus subtilis subsp. natto strain BN0 | ||
Toxin (Protein)
| Gene name | spoIISA | Uniprot ID | O34853 |
| Locus tag | JOW61_RS07220 | Protein ID | WP_003244695.1 |
| Coordinates | 1360119..1360865 (-) | Length | 249 a.a. |
Antitoxin (Protein)
| Gene name | spoIISB | Uniprot ID | G4EXD8 |
| Locus tag | JOW61_RS07215 | Protein ID | WP_003232646.1 |
| Coordinates | 1359949..1360119 (-) | Length | 57 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JOW61_RS07180 (JOW61_07105) | 1356808..1357137 | + | 330 | WP_014479562.1 | XkdW family protein | - |
| JOW61_RS07185 (JOW61_07110) | 1357134..1357298 | + | 165 | WP_014479563.1 | XkdX family protein | - |
| JOW61_RS07190 (JOW61_07115) | 1357345..1358184 | + | 840 | WP_014479564.1 | phage-like element PBSX protein XepA | - |
| JOW61_RS07195 (JOW61_07120) | 1358237..1358506 | + | 270 | WP_014479565.1 | hemolysin XhlA family protein | - |
| JOW61_RS07200 (JOW61_07125) | 1358519..1358782 | + | 264 | WP_014479566.1 | phage holin | - |
| JOW61_RS07205 (JOW61_07130) | 1358795..1359688 | + | 894 | WP_014479567.1 | N-acetylmuramoyl-L-alanine amidase | - |
| JOW61_RS07210 (JOW61_07135) | 1359726..1359863 | - | 138 | WP_003232648.1 | three component toxin-antitoxin-antitoxin system antitoxin SpoIISC | - |
| JOW61_RS07215 (JOW61_07140) | 1359949..1360119 | - | 171 | WP_003232646.1 | three component toxin-antitoxin-antitoxin system antitoxin SpoIISB | Antitoxin |
| JOW61_RS07220 (JOW61_07145) | 1360119..1360865 | - | 747 | WP_003244695.1 | toxin-antitoxin-antitoxin system toxin SpoIISA | Toxin |
| JOW61_RS07225 (JOW61_07150) | 1360975..1361976 | - | 1002 | WP_014479569.1 | inorganic phosphate transporter | - |
| JOW61_RS07230 (JOW61_07155) | 1361989..1362606 | - | 618 | WP_003218470.1 | DUF47 domain-containing protein | - |
| JOW61_RS07235 (JOW61_07160) | 1362882..1364198 | - | 1317 | WP_014479570.1 | serine/threonine exchanger | - |
| JOW61_RS07240 (JOW61_07165) | 1364587..1365537 | + | 951 | WP_014479571.1 | ring-cleaving dioxygenase | - |
| JOW61_RS07245 | 1365646..1365741 | + | 96 | Protein_1365 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1323667..1389598 | 65931 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 249 a.a. Molecular weight: 29061.50 Da Isoelectric Point: 4.6191
>T194516 WP_003244695.1 NZ_CP070844:c1360865-1360119 [Bacillus subtilis subsp. natto]
MVLFFQIMVWCIVAGLGLYVYATWRFEAKVKEKMSAIRKTWYLLFVLGAMVYWTYEPTSLFTHWERYLIVAVSFALIDAF
IFLSAYVKKLAGSELETDTREILEENNEMLHMYLNRLKTYQYLLKNEPIHVYYGSIDAYAEGIDKLLKTYADKMNLTASL
CHYSTQADKDRLTEHMDDPADVQTRLDRKDVYYDQYGKVVLIPFTIETQNYVIKLTSDSIVTEFDYLLFTSLTSIYDLVL
PIEEEGEG
MVLFFQIMVWCIVAGLGLYVYATWRFEAKVKEKMSAIRKTWYLLFVLGAMVYWTYEPTSLFTHWERYLIVAVSFALIDAF
IFLSAYVKKLAGSELETDTREILEENNEMLHMYLNRLKTYQYLLKNEPIHVYYGSIDAYAEGIDKLLKTYADKMNLTASL
CHYSTQADKDRLTEHMDDPADVQTRLDRKDVYYDQYGKVVLIPFTIETQNYVIKLTSDSIVTEFDYLLFTSLTSIYDLVL
PIEEEGEG
Download Length: 747 bp
>T194516 NZ_CP093539:1920304-1920492 [Staphylococcus hominis]
ATGAGTACACATTTAACGATTTTACTTTGGCTGGGTATTATATTTGTTGTTGCTGCTTCAATTATATTAGGGTTATTGCT
AAAATCTAAAAAAGAAGAACGTAAAGAATCATATTTAGGCTTTACAGTCATCTTCTATATTTTTGGTTTTGCTTTACTGA
TATATATACTATTATTTGGTATTTTATAA
ATGAGTACACATTTAACGATTTTACTTTGGCTGGGTATTATATTTGTTGTTGCTGCTTCAATTATATTAGGGTTATTGCT
AAAATCTAAAAAAGAAGAACGTAAAGAATCATATTTAGGCTTTACAGTCATCTTCTATATTTTTGGTTTTGCTTTACTGA
TATATATACTATTATTTGGTATTTTATAA
Antitoxin
Download Length: 57 a.a. Molecular weight: 6654.72 Da Isoelectric Point: 11.0203
>AT194516 WP_003232646.1 NZ_CP070844:c1360119-1359949 [Bacillus subtilis subsp. natto]
MERAFQNRCEPRAAKPFKILKKRSTTSVASYQVSPHTARIFKENERLIDEYKRKKA
MERAFQNRCEPRAAKPFKILKKRSTTSVASYQVSPHTARIFKENERLIDEYKRKKA
Download Length: 171 bp
>AT194516 NZ_CP093539:1920024-1920281 [Staphylococcus hominis]
ATGAATATTAATAAATTATTTTGGATTAATATTATGATTACCCTTTTATTTCTAGGTTTTAACATTATTGTCACCTATTT
TCCTAAGTTAGATGATTATTTCTGGCTCATACCTGGTTTAATCATATGTGGCCTCACTATTTCATTCAGTTTAATTGCCG
CTATCTTGGATAAAAACCTTATAAGCGAAATAATTTTTTTAACTAATCTAATCATTTTTTTATATTATATATATCCACTG
ATATATAACTTTTTTTAA
ATGAATATTAATAAATTATTTTGGATTAATATTATGATTACCCTTTTATTTCTAGGTTTTAACATTATTGTCACCTATTT
TCCTAAGTTAGATGATTATTTCTGGCTCATACCTGGTTTAATCATATGTGGCCTCACTATTTCATTCAGTTTAATTGCCG
CTATCTTGGATAAAAACCTTATAAGCGAAATAATTTTTTTAACTAATCTAATCATTTTTTTATATTATATATATCCACTG
ATATATAACTTTTTTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|