Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4657144..4657289 | Replicon | chromosome |
| Accession | NZ_CP070602 | ||
| Organism | Klebsiella pneumoniae strain KPA9853 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4657180..4657282 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4657144..4657289 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JW307_RS23540 | 4652274..4654334 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JW307_RS23545 | 4654338..4654997 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JW307_RS23550 | 4655076..4655306 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JW307_RS23555 | 4655419..4655793 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JW307_RS23560 | 4655797..4656666 | + | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| JW307_RS23565 | 4656683..4657021 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4657144..4657289 | - | 146 | - | - | Antitoxin |
| - | 4657180..4657282 | + | 103 | - | - | Toxin |
| JW307_RS23570 | 4657657..4657800 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JW307_RS23575 | 4657905..4658873 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JW307_RS23580 | 4659030..4659683 | + | 654 | WP_032418800.1 | protein-serine/threonine phosphatase | - |
| JW307_RS23585 | 4659680..4659871 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JW307_RS23590 | 4659969..4660208 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JW307_RS23595 | 4660324..4661757 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T194497 NZ_CP070602:4657180-4657282 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT194497 NZ_CP070602:c4657289-4657144 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
