Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1966207..1966351 | Replicon | chromosome |
| Accession | NZ_CP070598 | ||
| Organism | Klebsiella pneumoniae strain KPA4411 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1966243..1966345 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1966207..1966351 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JW306_RS11690 | 1961337..1963397 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JW306_RS11695 | 1963401..1964060 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JW306_RS11700 | 1964139..1964369 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JW306_RS11705 | 1964482..1964856 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JW306_RS11710 | 1964860..1965729 | + | 870 | WP_020956678.1 | copper homeostasis membrane protein CopD | - |
| JW306_RS11715 | 1965746..1966084 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1966207..1966351 | - | 145 | - | - | Antitoxin |
| - | 1966243..1966345 | + | 103 | - | - | Toxin |
| JW306_RS11720 | 1966478..1966837 | - | 360 | WP_077253379.1 | tyrosine-type recombinase/integrase | - |
| JW306_RS11725 | 1966836..1967315 | + | 480 | WP_032419797.1 | lysis protein | - |
| JW306_RS11730 | 1968104..1969609 | + | 1506 | WP_020956680.1 | hypothetical protein | - |
| JW306_RS11735 | 1969859..1970287 | - | 429 | WP_032419788.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| JW306_RS11740 | 1970297..1970578 | - | 282 | WP_032419786.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T194472 NZ_CP070598:1966243-1966345 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT194472 NZ_CP070598:c1966351-1966207 [Klebsiella pneumoniae]
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
ACATATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
