Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2493853..2494121 Replicon chromosome
Accession NZ_CP070593
Organism Escherichia coli strain ESC53083

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2493891..2493993 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2493853..2494121 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JW305_RS13635 2491011..2492450 + 1440 WP_001296139.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
JW305_RS13640 2492567..2492803 + 237 WP_001295499.1 DUF1480 family protein -
JW305_RS13645 2492908..2493099 + 192 WP_001296140.1 YebW family protein -
JW305_RS13650 2493100..2493756 - 657 WP_000812745.1 protein-serine/threonine phosphatase -
- 2493853..2494121 + 269 - - Antitoxin
- 2493891..2493993 - 103 - - Toxin
JW305_RS13655 2494151..2494492 - 342 WP_000976472.1 YebY family protein -
JW305_RS13660 2494505..2495377 - 873 WP_000879317.1 copper homeostasis membrane protein CopD -
JW305_RS13665 2495381..2495755 - 375 WP_000168747.1 CopC domain-containing protein YobA -
JW305_RS13670 2495894..2496124 + 231 WP_000916763.1 DNA polymerase III subunit theta -
JW305_RS13675 2496226..2496882 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein -
JW305_RS13680 2496906..2497568 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 103 bp

>T194449 NZ_CP070593:c2493993-2493891 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT194449 NZ_CP070593:2493853-2494121 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References