Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1940621..1940766 | Replicon | chromosome |
| Accession | NZ_CP070586 | ||
| Organism | Klebsiella pneumoniae strain KP52813 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1940657..1940759 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1940621..1940766 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JW304_RS11790 | 1935751..1937811 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| JW304_RS11795 | 1937815..1938474 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JW304_RS11800 | 1938553..1938783 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JW304_RS11805 | 1938896..1939270 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JW304_RS11810 | 1939274..1940143 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| JW304_RS11815 | 1940160..1940498 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1940621..1940766 | - | 146 | - | - | Antitoxin |
| - | 1940657..1940759 | + | 103 | - | - | Toxin |
| JW304_RS11820 | 1941134..1941277 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JW304_RS11825 | 1941382..1942350 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JW304_RS11830 | 1942507..1943160 | + | 654 | WP_032415192.1 | protein-serine/threonine phosphatase | - |
| JW304_RS11835 | 1943157..1943348 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JW304_RS11840 | 1943446..1943685 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JW304_RS11845 | 1943801..1945234 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T194419 NZ_CP070586:1940657-1940759 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT194419 NZ_CP070586:c1940766-1940621 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
