Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3158042..3158187 | Replicon | chromosome |
| Accession | NZ_CP070564 | ||
| Organism | Klebsiella pneumoniae strain KP51069 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3158049..3158151 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3158042..3158187 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JW299_RS17380 | 3153574..3155007 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JW299_RS17385 | 3155123..3155362 | + | 240 | WP_002911393.1 | YebV family protein | - |
| JW299_RS17390 | 3155460..3155651 | + | 192 | WP_002911395.1 | YebW family protein | - |
| JW299_RS17395 | 3155648..3156301 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| JW299_RS17400 | 3156458..3157426 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JW299_RS17405 | 3157531..3157674 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3158042..3158187 | + | 146 | - | - | Antitoxin |
| - | 3158049..3158151 | - | 103 | - | - | Toxin |
| JW299_RS17410 | 3158310..3158648 | - | 339 | WP_002911404.1 | YebY family protein | - |
| JW299_RS17415 | 3158665..3159534 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| JW299_RS17420 | 3159538..3159912 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JW299_RS17425 | 3160025..3160255 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JW299_RS17430 | 3160334..3160993 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JW299_RS17435 | 3160997..3163057 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T194338 NZ_CP070564:c3158151-3158049 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT194338 NZ_CP070564:3158042-3158187 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
