Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1287576..1287719 | Replicon | chromosome |
| Accession | NZ_CP070549 | ||
| Organism | Citrobacter freundii strain CF49969 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1287581..1287684 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1287576..1287719 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JW296_RS08670 | 1284766..1286154 | + | 1389 | WP_049014636.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| JW296_RS08675 | 1286255..1286491 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| JW296_RS08680 | 1286594..1286785 | + | 192 | WP_003034941.1 | YebW family protein | - |
| JW296_RS08685 | 1286786..1287427 | - | 642 | WP_128295755.1 | protein-serine/threonine phosphatase | - |
| - | 1287576..1287719 | + | 144 | - | - | Antitoxin |
| - | 1287581..1287684 | - | 104 | - | - | Toxin |
| JW296_RS08690 | 1287840..1288178 | - | 339 | WP_003034934.1 | YebY family protein | - |
| JW296_RS08695 | 1288199..1289071 | - | 873 | WP_032935389.1 | copper homeostasis membrane protein CopD | - |
| JW296_RS08700 | 1289075..1289449 | - | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| JW296_RS08705 | 1289593..1289823 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| JW296_RS08710 | 1289930..1290586 | + | 657 | WP_003841657.1 | carbon-nitrogen hydrolase family protein | - |
| JW296_RS08715 | 1290610..1291272 | + | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T194309 NZ_CP070549:c1287684-1287581 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT194309 NZ_CP070549:1287576-1287719 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
