Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1995686..1995831 | Replicon | chromosome |
| Accession | NZ_CP070528 | ||
| Organism | Klebsiella pneumoniae strain KP47693 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1995722..1995824 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1995686..1995831 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JW292_RS10355 | 1990816..1992876 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JW292_RS10360 | 1992880..1993539 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JW292_RS10365 | 1993618..1993848 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JW292_RS10370 | 1993961..1994335 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JW292_RS10375 | 1994339..1995208 | + | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| JW292_RS10380 | 1995225..1995563 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1995686..1995831 | - | 146 | - | - | Antitoxin |
| - | 1995722..1995824 | + | 103 | - | - | Toxin |
| JW292_RS10385 | 1996199..1996342 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JW292_RS10390 | 1996447..1997415 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JW292_RS10395 | 1997572..1998225 | + | 654 | WP_032418800.1 | protein-serine/threonine phosphatase | - |
| JW292_RS10400 | 1998222..1998413 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JW292_RS10405 | 1998511..1998750 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JW292_RS10410 | 1998866..2000299 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T194267 NZ_CP070528:1995722-1995824 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT194267 NZ_CP070528:c1995831-1995686 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
