Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1618322..1618468 | Replicon | chromosome |
| Accession | NZ_CP070520 | ||
| Organism | Klebsiella aerogenes strain EA46506 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1618330..1618433 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1618322..1618468 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JW290_RS08180 | 1613624..1614142 | + | 519 | WP_058675524.1 | spore coat U domain-containing protein | - |
| JW290_RS08185 | 1614160..1614909 | + | 750 | WP_058675525.1 | molecular chaperone | - |
| JW290_RS08190 | 1614912..1617236 | + | 2325 | WP_045360584.1 | fimbrial biogenesis outer membrane usher protein | - |
| JW290_RS08195 | 1617249..1618202 | + | 954 | WP_072255060.1 | spore coat U domain-containing protein | - |
| - | 1618322..1618468 | + | 147 | - | - | Antitoxin |
| - | 1618330..1618433 | - | 104 | - | - | Toxin |
| JW290_RS08200 | 1618590..1618931 | - | 342 | WP_015705946.1 | YebY family protein | - |
| JW290_RS08205 | 1618945..1619814 | - | 870 | WP_042893412.1 | copper homeostasis membrane protein CopD | - |
| JW290_RS08210 | 1619818..1620192 | - | 375 | WP_042893410.1 | CopC domain-containing protein YobA | - |
| JW290_RS08215 | 1620327..1620557 | + | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| JW290_RS08220 | 1620637..1621296 | + | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| JW290_RS08225 | 1621299..1623359 | - | 2061 | WP_046883145.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T194246 NZ_CP070520:c1618433-1618330 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT194246 NZ_CP070520:1618322-1618468 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
