Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2036117..2036257 | Replicon | chromosome |
| Accession | NZ_CP070508 | ||
| Organism | Serratia ureilytica strain AM923 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2036161..2036257 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2036117..2036257 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IHE77_RS09750 (IHE77_09740) | 2031338..2031763 | + | 426 | WP_033642714.1 | RNA polymerase-binding protein DksA | - |
| IHE77_RS09755 (IHE77_09745) | 2031941..2032894 | + | 954 | WP_033644252.1 | prolyl aminopeptidase | - |
| IHE77_RS09760 (IHE77_09750) | 2032926..2033156 | - | 231 | WP_033642715.1 | DNA polymerase III subunit theta | - |
| IHE77_RS09765 (IHE77_09755) | 2033497..2034015 | + | 519 | WP_025302449.1 | non-heme ferritin | - |
| IHE77_RS09770 (IHE77_09760) | 2034308..2034724 | + | 417 | WP_046899289.1 | CopC domain-containing protein YobA | - |
| IHE77_RS09775 (IHE77_09765) | 2034727..2035608 | + | 882 | WP_197665379.1 | copper homeostasis membrane protein CopD | - |
| IHE77_RS09780 (IHE77_09770) | 2035678..2036019 | + | 342 | WP_016928154.1 | YebY family protein | - |
| - | 2036117..2036257 | - | 141 | - | - | Antitoxin |
| - | 2036161..2036257 | + | 97 | - | - | Toxin |
| IHE77_RS09785 (IHE77_09775) | 2036508..2036912 | + | 405 | WP_060659651.1 | hypothetical protein | - |
| IHE77_RS09790 (IHE77_09780) | 2036909..2037127 | - | 219 | WP_004940942.1 | hypothetical protein | - |
| IHE77_RS09795 (IHE77_09785) | 2037202..2037546 | - | 345 | WP_033642719.1 | hypothetical protein | - |
| IHE77_RS09800 (IHE77_09790) | 2037795..2038145 | + | 351 | WP_004940949.1 | DUF4377 domain-containing protein | - |
| IHE77_RS09805 (IHE77_09795) | 2038196..2038498 | - | 303 | WP_016928136.1 | hypothetical protein | - |
| IHE77_RS09810 (IHE77_09800) | 2038498..2039112 | - | 615 | WP_163965052.1 | DUF4225 domain-containing protein | - |
| IHE77_RS09815 (IHE77_09805) | 2039555..2040754 | + | 1200 | WP_033652019.1 | trans-2-enoyl-CoA reductase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T194229 NZ_CP070508:2036161-2036257 [Serratia ureilytica]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT194229 NZ_CP070508:c2036257-2036117 [Serratia ureilytica]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
