Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 2697597..2698050 Replicon chromosome
Accession NZ_CP070503
Organism Pseudomonas atacamensis strain SM1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag JWU58_RS12355 Protein ID WP_206422176.1
Coordinates 2697597..2697866 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag JWU58_RS12360 Protein ID WP_056789559.1
Coordinates 2697856..2698050 (-) Length 65 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JWU58_RS12355 2697597..2697866 - 270 WP_206422176.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin
JWU58_RS12360 2697856..2698050 - 195 WP_056789559.1 hypothetical protein Antitoxin
JWU58_RS12365 2698281..2698499 - 219 WP_024013150.1 hypothetical protein -
JWU58_RS12370 2698607..2700286 - 1680 WP_122881677.1 MHS family MFS transporter -
JWU58_RS12375 2700465..2701232 - 768 WP_206422065.1 phosphonate ABC transporter, permease protein PhnE -
JWU58_RS12380 2701229..2702056 - 828 WP_206422066.1 ABC transporter permease subunit -
JWU58_RS12385 2702050..2702847 - 798 WP_056789573.1 ATP-binding cassette domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-83)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10136.85 Da        Isoelectric Point: 10.8021

>T194204 WP_206422176.1 NZ_CP070503:c2697866-2697597 [Pseudomonas atacamensis]
MPVSWSKPALGDLADIIEYVEQRNTVASVALHQKLSAAARRLSWIPHGFRSGRIPGTREMVINSNYLLVYRVTDHIKILT
LLHARKKYP

Download         Length: 270 bp

>T194204 NZ_CP093390:194576-195061 [Salmonella enterica]
GTGGGACGTGTAACAGCACCAGAACCTTTGTCCGCTTTTCATCAGGTAGCTGAGTTCGTCAGCGGTGAAGCTGTGCTCGA
TGACTGGTTGAAGCAAAAGGGCCTCAAAAACCAGGCTCTCGGAGCGGCCAGAACATTTGTGGTGTGCAAGAAAGACACGC
AGCAAGTAGCCGGTTTTTACTCTCTGGCCACCGGCAGCGTCAACCATACAGAAGCGACAGGCAATCTTCGGCGTAACATG
CCAGATCCCATCCCTGTCATTATACTTGCCCGTCTTGCTGTCGATCTCTCATTCCATGGAAAAGGGCTTGGTGCTGATTT
ACTTCATGATGCAGTGCTTCGTTGCTATCGGGTTGCTGAGAATATTGGTGTACGTGCAATCATGGTTCATGCACTTACCG
AAGAAGCCAAAAATTTCTACATTCACCATGGTTTCAAATCATCACAAACTCAGCAGCGAACATTGTTCCTTAGGCTCCCT
CAATAG

Antitoxin


Download         Length: 65 a.a.        Molecular weight: 7316.22 Da        Isoelectric Point: 4.2950

>AT194204 WP_056789559.1 NZ_CP070503:c2698050-2697856 [Pseudomonas atacamensis]
MSAELSLIVSDFETEEEAADYDLWYRAKVQAALDDPRPPIPHDEAMVLLGQMLEERRKNRRAAG

Download         Length: 195 bp

>AT194204 NZ_CP093390:194301-194588 [Salmonella enterica]
ATGCTATACAAGGGGTGTCTCATGAAATCAGATGTTCAACTTAACCTTAGAGCTAAGGAGTCGCAGCGGGCGCTCATTGA
TGCAGCTGCGGAAATCCTTCACAAGTCACGTACAGATTTCATTCTGGAAACGGCCTGCCAGGCTGCCGAGAAAGTGATCC
TTGACCGCCGTGTATTTAACTTTAACGATGAGCAATATGAGGAGTTCATCAATCTGCTTGATGCACCGGTCGCAGATGAT
CCCGTTATCGAAAAACTGCTGGCAAGGAAACCTCAGTGGGACGTGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References