Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | vapBC/PIN(toxin) |
| Location | 1589414..1590069 | Replicon | chromosome |
| Accession | NZ_CP070501 | ||
| Organism | Agrococcus sp. Marseille-Q4369 | ||
Toxin (Protein)
| Gene name | vapC | Uniprot ID | - |
| Locus tag | JSQ78_RS07955 | Protein ID | WP_026373128.1 |
| Coordinates | 1589414..1589851 (-) | Length | 146 a.a. |
Antitoxin (Protein)
| Gene name | vapB | Uniprot ID | - |
| Locus tag | JSQ78_RS07960 | Protein ID | WP_211446872.1 |
| Coordinates | 1589848..1590069 (-) | Length | 74 a.a. |
Genomic Context
Location: 1590154..1590855 (702 bp)
Type: Others
Protein ID: WP_211446873.1
Type: Others
Protein ID: WP_211446873.1
Location: 1590980..1592311 (1332 bp)
Type: Others
Protein ID: WP_211446875.1
Type: Others
Protein ID: WP_211446875.1
Location: 1592359..1593618 (1260 bp)
Type: Others
Protein ID: WP_211446876.1
Type: Others
Protein ID: WP_211446876.1
Location: 1593740..1593952 (213 bp)
Type: Others
Protein ID: Protein_1575
Type: Others
Protein ID: Protein_1575
Location: 1587142..1587873 (732 bp)
Type: Others
Protein ID: WP_211446868.1
Type: Others
Protein ID: WP_211446868.1
Location: 1587870..1589324 (1455 bp)
Type: Others
Protein ID: WP_211446870.1
Type: Others
Protein ID: WP_211446870.1
Location: 1589414..1589851 (438 bp)
Type: Toxin
Protein ID: WP_026373128.1
Type: Toxin
Protein ID: WP_026373128.1
Location: 1589848..1590069 (222 bp)
Type: Antitoxin
Protein ID: WP_211446872.1
Type: Antitoxin
Protein ID: WP_211446872.1
Location: 1594022..1594603 (582 bp)
Type: Others
Protein ID: WP_211446878.1
Type: Others
Protein ID: WP_211446878.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JSQ78_RS07945 (JSQ78_07945) | 1587142..1587873 | - | 732 | WP_211446868.1 | DUF4194 domain-containing protein | - |
| JSQ78_RS07950 (JSQ78_07950) | 1587870..1589324 | - | 1455 | WP_211446870.1 | DUF3375 domain-containing protein | - |
| JSQ78_RS07955 (JSQ78_07955) | 1589414..1589851 | - | 438 | WP_026373128.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
| JSQ78_RS07960 (JSQ78_07960) | 1589848..1590069 | - | 222 | WP_211446872.1 | hypothetical protein | Antitoxin |
| JSQ78_RS07965 (JSQ78_07965) | 1590154..1590855 | + | 702 | WP_211446873.1 | FCD domain-containing protein | - |
| JSQ78_RS07970 (JSQ78_07970) | 1590980..1592311 | + | 1332 | WP_211446875.1 | MFS transporter | - |
| JSQ78_RS07975 (JSQ78_07975) | 1592359..1593618 | + | 1260 | WP_211446876.1 | alpha-hydroxy acid oxidase | - |
| JSQ78_RS13840 | 1593740..1593952 | + | 213 | Protein_1575 | nuclease | - |
| JSQ78_RS07985 (JSQ78_07985) | 1594022..1594603 | - | 582 | WP_211446878.1 | cysteine hydrolase | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 146 a.a. Molecular weight: 15173.26 Da Isoelectric Point: 6.3288
>T194200 WP_026373128.1 NZ_CP070501:c1589851-1589414 [Agrococcus sp. Marseille-Q4369]
VILLDTSVLVYAVGAEHPLREPCRAVIAAVGDGTLAATTTVEVLQEFAHVRARRRGRDDAAALTERYATALAPLISVDAD
DLSAGLRLFREHEPLGAFDAVLAAVAQRRDHVRALVSADRGFASIPGLVHLDPGASGFRAAAGIG
VILLDTSVLVYAVGAEHPLREPCRAVIAAVGDGTLAATTTVEVLQEFAHVRARRRGRDDAAALTERYATALAPLISVDAD
DLSAGLRLFREHEPLGAFDAVLAAVAQRRDHVRALVSADRGFASIPGLVHLDPGASGFRAAAGIG
Download Length: 438 bp
>T194200 NZ_CP093386:c4659745-4659434 [Salmonella enterica]
ATGCAATTTATAGAAACGGAACTCTTTACTGAAGATGTTAAAAAACTGCTCGATGATGATGAATACCATAAGCTTCAGGT
TTTTATGGCTCAGCATCCAGATTGTGGTGATGTCATTCAGGAAACGGGCGGCCTGAGAAAAATGCGCTGGGGAGCGCGAG
GCAAAGGAAAGCGTAGTGGCGTGCGAATTATCTATTTTCACCGTAGTCAACGGTATGAGATTCGCTTGCTTCTGATTTAT
CAAAAAGGCATTAAAGATGATCTCACGCCGCAGGAAAAAGCGGTGCTTCGTATGCTGAATGAGAGGTGGTAG
ATGCAATTTATAGAAACGGAACTCTTTACTGAAGATGTTAAAAAACTGCTCGATGATGATGAATACCATAAGCTTCAGGT
TTTTATGGCTCAGCATCCAGATTGTGGTGATGTCATTCAGGAAACGGGCGGCCTGAGAAAAATGCGCTGGGGAGCGCGAG
GCAAAGGAAAGCGTAGTGGCGTGCGAATTATCTATTTTCACCGTAGTCAACGGTATGAGATTCGCTTGCTTCTGATTTAT
CAAAAAGGCATTAAAGATGATCTCACGCCGCAGGAAAAAGCGGTGCTTCGTATGCTGAATGAGAGGTGGTAG
Antitoxin
Download Length: 74 a.a. Molecular weight: 7700.72 Da Isoelectric Point: 4.5388
>AT194200 WP_211446872.1 NZ_CP070501:c1590069-1589848 [Agrococcus sp. Marseille-Q4369]
VLIETEQRVRLEQRAADRGVSVAALVRDAIDLVYPPHGDRRAAAAADILAAEPMAVGDPAALRAELDELRGGA
VLIETEQRVRLEQRAADRGVSVAALVRDAIDLVYPPHGDRRAAAAADILAAEPMAVGDPAALRAELDELRGGA
Download Length: 222 bp
>AT194200 NZ_CP093386:c4659433-4659143 [Salmonella enterica]
ATGGATAAAGTGTTATTTGAGCGATTAACTCAAAGTATGTCTCAAATGAATGAAATCATTGAAGGGACCCGTGAACCTTC
TCGTACCTTTCATATTGATGCAATGAAGATTAAAGAAATACGGCAGGCATCTGGGTTGTCGCAATCTAAGTTTGCAGAGC
TGATTTCGGTCAACGTGGATACGCTGCGCAACTGGGAGCAAGGAAGACGTTCACCGACAGGGCCAGCCAAAGCGTTACTT
CGCGCCATTGCCAACGACCCGAGAAACGTTATACAAGCATTGCGTTATTGA
ATGGATAAAGTGTTATTTGAGCGATTAACTCAAAGTATGTCTCAAATGAATGAAATCATTGAAGGGACCCGTGAACCTTC
TCGTACCTTTCATATTGATGCAATGAAGATTAAAGAAATACGGCAGGCATCTGGGTTGTCGCAATCTAAGTTTGCAGAGC
TGATTTCGGTCAACGTGGATACGCTGCGCAACTGGGAGCAAGGAAGACGTTCACCGACAGGGCCAGCCAAAGCGTTACTT
CGCGCCATTGCCAACGACCCGAGAAACGTTATACAAGCATTGCGTTATTGA