Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 806183..806454 | Replicon | chromosome |
| Accession | NZ_CP070482 | ||
| Organism | Escherichia coli strain BTH101 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 806313..806416 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 806183..806454 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JWV29_RS03815 | 802738..803400 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JWV29_RS03820 | 803424..804080 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JWV29_RS03825 | 804182..804412 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JWV29_RS03830 | 804551..804925 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JWV29_RS03835 | 804929..805801 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| JWV29_RS03840 | 805814..806155 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 806183..806454 | - | 272 | - | - | Antitoxin |
| - | 806313..806416 | + | 104 | - | - | Toxin |
| JWV29_RS03845 | 806551..807207 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JWV29_RS03850 | 807208..807399 | - | 192 | WP_000457842.1 | YebW family protein | - |
| JWV29_RS03855 | 807504..807740 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JWV29_RS03860 | 807858..809297 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T194134 NZ_CP070482:806313-806416 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT194134 NZ_CP070482:c806454-806183 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
