Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1943682..1943827 | Replicon | chromosome |
| Accession | NZ_CP070464 | ||
| Organism | Klebsiella pneumoniae strain B28906 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1943718..1943820 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1943682..1943827 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JT748_RS09370 | 1938812..1940872 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| JT748_RS09375 | 1940876..1941535 | - | 660 | WP_134919889.1 | exodeoxyribonuclease X | - |
| JT748_RS09380 | 1941614..1941844 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JT748_RS09385 | 1941957..1942331 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JT748_RS09390 | 1942335..1943204 | + | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| JT748_RS09395 | 1943221..1943559 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1943682..1943827 | - | 146 | - | - | Antitoxin |
| - | 1943718..1943820 | + | 103 | - | - | Toxin |
| JT748_RS09400 | 1944195..1944338 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JT748_RS09405 | 1944443..1945411 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| JT748_RS09410 | 1945568..1946221 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| JT748_RS09415 | 1946218..1946409 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JT748_RS09420 | 1946507..1946746 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JT748_RS09425 | 1946862..1948295 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T194106 NZ_CP070464:1943718-1943820 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT194106 NZ_CP070464:c1943827-1943682 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
