Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1949593..1949740 | Replicon | chromosome |
| Accession | NZ_CP070454 | ||
| Organism | Klebsiella quasipneumoniae strain B25110 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1949634..1949736 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1949593..1949740 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JT746_RS09555 | 1944728..1946788 | + | 2061 | WP_032428920.1 | oligopeptidase B | - |
| JT746_RS09560 | 1946792..1947451 | - | 660 | WP_109547165.1 | exodeoxyribonuclease X | - |
| JT746_RS09565 | 1947530..1947760 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JT746_RS09570 | 1947873..1948247 | + | 375 | WP_032453372.1 | CopC domain-containing protein YobA | - |
| JT746_RS09575 | 1948251..1949120 | + | 870 | WP_048297809.1 | copper homeostasis membrane protein CopD | - |
| JT746_RS09580 | 1949137..1949475 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1949593..1949740 | - | 148 | - | - | Antitoxin |
| - | 1949634..1949736 | + | 103 | - | - | Toxin |
| JT746_RS09585 | 1950115..1950258 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| JT746_RS09590 | 1950362..1951330 | - | 969 | WP_072413392.1 | VirK/YbjX family protein | - |
| JT746_RS09595 | 1951487..1952140 | + | 654 | WP_101994712.1 | protein-serine/threonine phosphatase | - |
| JT746_RS09600 | 1952137..1952328 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JT746_RS09605 | 1952426..1952665 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JT746_RS09610 | 1952781..1954211 | - | 1431 | WP_032428917.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T194071 NZ_CP070454:1949634-1949736 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT194071 NZ_CP070454:c1949740-1949593 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
