Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/LOTUS_5_Limkain_b1(toxin)
Location 5277870..5278495 Replicon chromosome
Accession NZ_CP070430
Organism Klebsiella pneumoniae strain B3923

Toxin (Protein)


Gene name vapC Uniprot ID R4Y4A3
Locus tag JT729_RS25705 Protein ID WP_002882817.1
Coordinates 5277870..5278253 (-) Length 128 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID J2DFR0
Locus tag JT729_RS25710 Protein ID WP_004150355.1
Coordinates 5278253..5278495 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JT729_RS25690 5275236..5276138 + 903 WP_002882822.1 formate dehydrogenase subunit beta -
JT729_RS25695 5276135..5276770 + 636 WP_002882818.1 formate dehydrogenase cytochrome b556 subunit -
JT729_RS25700 5276767..5277696 + 930 WP_064162495.1 formate dehydrogenase accessory protein FdhE -
JT729_RS25705 5277870..5278253 - 384 WP_002882817.1 type II toxin-antitoxin system VapC family toxin Toxin
JT729_RS25710 5278253..5278495 - 243 WP_004150355.1 ribbon-helix-helix domain-containing protein Antitoxin
JT729_RS25715 5278700..5279617 + 918 WP_004181612.1 alpha/beta hydrolase -
JT729_RS25720 5279631..5280572 - 942 WP_004178031.1 fatty acid biosynthesis protein FabY -
JT729_RS25725 5280617..5281054 - 438 WP_064162494.1 D-tyrosyl-tRNA(Tyr) deacylase -
JT729_RS25730 5281051..5281911 - 861 WP_004146232.1 virulence factor BrkB family protein -
JT729_RS25735 5281905..5282504 - 600 WP_004151865.1 glucose-1-phosphatase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(7-112)

Antitoxin

Predicted DNA-binding protein, ribbon-helix-helix domain

(16-47)


Sequences

Toxin        


Download         Length: 128 a.a.        Molecular weight: 14377.62 Da        Isoelectric Point: 7.3178

>T193999 WP_002882817.1 NZ_CP070430:c5278253-5277870 [Klebsiella pneumoniae]
MTSGSALFDTNILIDLFSGRREAKQALEAWPPQNAISLITWMEVMVGAKKYHQEQRTRMALSTFNIINISQDIAERSVAL
RQEYKLKLPDAIILATAQLHRLELITRNTKDFAGIPGVVTPYEIHPE

Download         Length: 384 bp

>T193999 NZ_CP093321:c1006202-1005798 [Pseudomonas syringae CC440]
ATGCTCAAGTACATGCTTGACACCAATATTTGCATTTTCACTATAAAGAACAAGCCAACTTCGGTGCGTGAAGCCTTCAA
CCTCCATCACGGACAGCTATGTATCAGCGCGATCACGTTGATGGAGCTTGTCTACGGCGCAGAAAAGTCTTTGAGCCCCG
AAAGAAACCTTGCCGTTGTAGAGGGTTTCACAGCGCGTCTTGAAGTGCTCCCTTACGATAGCGACGCTGCGGCTCATACC
GGCATGATCAGAGCCGAACTGGCTAGATCGGGCACACCGATCGGCCCGTACGATCAAATGATTGCAGGACACGCCCGCTC
TCTAGGCCTGGTGGTGATCACTAATAATCAGCGTGAATTCCGACGCGTCGAGGGGCTGAGGGTAGAAGATTGGGTAAGCC
AATGA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 9567.83 Da        Isoelectric Point: 4.3509

>AT193999 WP_004150355.1 NZ_CP070430:c5278495-5278253 [Klebsiella pneumoniae]
MMAERDMGRILLDLSDDVIQRLDDLKVQRNIPRAELLREAVEQYLEKQDRAKDTISSALGLWQDCEEDGMEYQRQLRKEW

Download         Length: 243 bp

>AT193999 NZ_CP093321:c1006432-1006202 [Pseudomonas syringae CC440]
ATGGAACAATCCACAGTCTTCAAAAGCAATCGAAGCCAGGCTGTCCGACTGCCAAAAGCGGTGGCCTTGCCAGACGACGT
GAAACGTGTCGATGTCGTAGCCGTGGGCAGAACCCGCATTATTTCCCCTGCCGGTGAAATGTGGAACAGCTGGTTCGATG
GTGAAAGTGTCAGTGATGATTTCATGGCAGAGCGTGGACAACCAGCCGAACAGCAGCGCGAATCGCTCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GPK8

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GGU9

References