Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1926053..1926198 | Replicon | chromosome |
| Accession | NZ_CP070425 | ||
| Organism | Klebsiella pneumoniae strain B3824 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1926089..1926191 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1926053..1926198 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JT727_RS09235 | 1921183..1923243 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| JT727_RS09240 | 1923247..1923906 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| JT727_RS09245 | 1923985..1924215 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| JT727_RS09250 | 1924328..1924702 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| JT727_RS09255 | 1924706..1925575 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| JT727_RS09260 | 1925592..1925930 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1926053..1926198 | - | 146 | - | - | Antitoxin |
| - | 1926089..1926191 | + | 103 | - | - | Toxin |
| JT727_RS09265 | 1926567..1926710 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| JT727_RS09270 | 1926815..1927783 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| JT727_RS09275 | 1927940..1928593 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| JT727_RS09280 | 1928590..1928781 | - | 192 | WP_002911395.1 | YebW family protein | - |
| JT727_RS09285 | 1928879..1929118 | - | 240 | WP_002911393.1 | YebV family protein | - |
| JT727_RS09290 | 1929234..1930667 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T193970 NZ_CP070425:1926089-1926191 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT193970 NZ_CP070425:c1926198-1926053 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
