Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2127426..2127658 | Replicon | chromosome |
| Accession | NZ_CP070296 | ||
| Organism | Escherichia albertii strain Sample 165 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2127554..2127656 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2127426..2127658 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JRC44_RS10335 | 2123976..2124638 | - | 663 | WP_025238865.1 | exodeoxyribonuclease X | - |
| JRC44_RS10340 | 2124662..2125318 | - | 657 | WP_025238866.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JRC44_RS10345 | 2125420..2125650 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| JRC44_RS10350 | 2125789..2126166 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| JRC44_RS10355 | 2126170..2127042 | + | 873 | WP_025238867.1 | copper homeostasis membrane protein CopD | - |
| JRC44_RS10360 | 2127055..2127396 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 2127426..2127658 | - | 233 | - | - | Antitoxin |
| - | 2127554..2127656 | + | 103 | - | - | Toxin |
| JRC44_RS10365 | 2128275..2128972 | + | 698 | WP_235180788.1 | IS1 family transposase | - |
| JRC44_RS10370 | 2129054..2129633 | + | 580 | Protein_2049 | bfpT-regulated chaperone | - |
| JRC44_RS10375 | 2130090..2130254 | + | 165 | WP_157944741.1 | hypothetical protein | - |
| JRC44_RS10380 | 2130828..2131148 | + | 321 | WP_000086028.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2125420..2137109 | 11689 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T193774 NZ_CP070296:2127554-2127656 [Escherichia albertii]
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT193774 NZ_CP070296:c2127658-2127426 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
