Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2178222..2178454 | Replicon | chromosome |
| Accession | NZ_CP070292 | ||
| Organism | Escherichia albertii strain Sample 166 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2178350..2178452 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2178222..2178454 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JRC43_RS10570 | 2174766..2175434 | - | 669 | WP_208634862.1 | exodeoxyribonuclease X | - |
| JRC43_RS10575 | 2175458..2176114 | - | 657 | WP_025238866.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JRC43_RS10580 | 2176216..2176446 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| JRC43_RS10585 | 2176585..2176962 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| JRC43_RS10590 | 2176966..2177838 | + | 873 | WP_025238867.1 | copper homeostasis membrane protein CopD | - |
| JRC43_RS10595 | 2177851..2178192 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 2178222..2178454 | - | 233 | - | - | Antitoxin |
| - | 2178350..2178452 | + | 103 | - | - | Toxin |
| JRC43_RS10600 | 2179074..2179653 | + | 580 | Protein_2103 | bfpT-regulated chaperone | - |
| JRC43_RS10605 | 2180110..2180274 | + | 165 | WP_157944741.1 | hypothetical protein | - |
| JRC43_RS10610 | 2180848..2181168 | + | 321 | WP_000086028.1 | hypothetical protein | - |
| JRC43_RS10615 | 2181241..2182698 | + | 1458 | WP_024164813.1 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2170350..2200133 | 29783 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T193738 NZ_CP070292:2178350-2178452 [Escherichia albertii]
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT193738 NZ_CP070292:c2178454-2178222 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
