Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1990053..1990285 | Replicon | chromosome |
| Accession | NZ_CP070290 | ||
| Organism | Escherichia albertii strain Sample 167 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1990180..1990283 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1990053..1990285 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JRC41_RS09525 | 1986983..1987645 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| JRC41_RS09530 | 1987669..1987881 | - | 213 | Protein_1876 | carbon-nitrogen hydrolase family protein YobB | - |
| JRC41_RS09535 | 1988047..1988277 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| JRC41_RS09540 | 1988416..1988793 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| JRC41_RS09545 | 1988797..1989669 | + | 873 | WP_208631182.1 | copper homeostasis membrane protein CopD | - |
| JRC41_RS09550 | 1989682..1990023 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 1990053..1990285 | - | 233 | - | - | Antitoxin |
| - | 1990180..1990283 | + | 104 | - | - | Toxin |
| JRC41_RS09555 | 1992027..1992347 | + | 321 | WP_054411012.1 | hypothetical protein | - |
| JRC41_RS09560 | 1992420..1993877 | + | 1458 | WP_024165002.1 | Trk system potassium transporter TrkG | - |
| JRC41_RS22305 | 1994197..1994988 | - | 792 | WP_231932500.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T193711 NZ_CP070290:1990180-1990283 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT193711 NZ_CP070290:c1990285-1990053 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
