Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2081252..2081484 | Replicon | chromosome |
| Accession | NZ_CP070287 | ||
| Organism | Escherichia albertii strain Sample 168 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2081380..2081482 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2081252..2081484 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JRC45_RS10130 | 2078182..2078844 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| JRC45_RS10135 | 2078868..2079080 | - | 213 | Protein_2004 | carbon-nitrogen hydrolase family protein YobB | - |
| JRC45_RS10140 | 2079246..2079476 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| JRC45_RS10145 | 2079615..2079992 | + | 378 | WP_204629357.1 | CopC domain-containing protein YobA | - |
| JRC45_RS10150 | 2079996..2080868 | + | 873 | WP_059244199.1 | copper homeostasis membrane protein CopD | - |
| JRC45_RS10155 | 2080881..2081222 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 2081252..2081484 | - | 233 | - | - | Antitoxin |
| - | 2081380..2081482 | + | 103 | - | - | Toxin |
| JRC45_RS10160 | 2083228..2083548 | + | 321 | WP_000086028.1 | hypothetical protein | - |
| JRC45_RS10165 | 2083621..2085078 | + | 1458 | WP_024164813.1 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | espJ | 2075101..2105272 | 30171 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T193679 NZ_CP070287:2081380-2081482 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT193679 NZ_CP070287:c2081484-2081252 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
