Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | parDE/RelE-RHH |
| Location | 11161..11708 | Replicon | plasmid pESA134_2 |
| Accession | NZ_CP070286 | ||
| Organism | Escherichia albertii strain Sample 169 | ||
Toxin (Protein)
| Gene name | parE | Uniprot ID | G7QEJ9 |
| Locus tag | JRC46_RS24085 | Protein ID | WP_001384452.1 |
| Coordinates | 11430..11708 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | parD | Uniprot ID | - |
| Locus tag | JRC46_RS24080 | Protein ID | WP_204620402.1 |
| Coordinates | 11161..11430 (+) | Length | 90 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JRC46_RS24050 (6920) | 6920..7519 | + | 600 | WP_204620398.1 | PIN domain-containing protein | - |
| - (8124) | 8124..8185 | - | 62 | NuclAT_1 | - | - |
| - (8124) | 8124..8185 | - | 62 | NuclAT_1 | - | - |
| - (8124) | 8124..8185 | - | 62 | NuclAT_1 | - | - |
| - (8124) | 8124..8185 | - | 62 | NuclAT_1 | - | - |
| JRC46_RS24055 (8229) | 8229..8378 | + | 150 | WP_244259636.1 | Hok/Gef family protein | - |
| JRC46_RS24060 (8662) | 8662..8919 | + | 258 | WP_000083834.1 | replication regulatory protein RepA | - |
| JRC46_RS25565 (9154) | 9154..9228 | + | 75 | WP_064763977.1 | RepA leader peptide Tap | - |
| JRC46_RS24070 (9221) | 9221..10243 | + | 1023 | WP_204620400.1 | plasmid replication initiator RepA | - |
| JRC46_RS24075 (10948) | 10948..11106 | + | 159 | WP_204620401.1 | hypothetical protein | - |
| JRC46_RS24080 (11161) | 11161..11430 | + | 270 | WP_204620402.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin |
| JRC46_RS24085 (11430) | 11430..11708 | + | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin |
| JRC46_RS24090 (11736) | 11736..11798 | + | 63 | Protein_13 | 3'-5' exonuclease | - |
| JRC46_RS24095 (11887) | 11887..12171 | + | 285 | WP_204620403.1 | ribbon-helix-helix domain-containing protein | - |
| JRC46_RS24100 (12171) | 12171..12431 | + | 261 | Protein_15 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| JRC46_RS24105 (12527) | 12527..12784 | + | 258 | WP_204620446.1 | hypothetical protein | - |
| JRC46_RS24110 (12786) | 12786..13481 | + | 696 | WP_204678096.1 | hypothetical protein | - |
| JRC46_RS24115 (13485) | 13485..13946 | + | 462 | WP_204678098.1 | hypothetical protein | - |
| JRC46_RS24120 (14211) | 14211..14749 | - | 539 | Protein_19 | transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | - | espC / espC | 1..176494 | 176494 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10762.38 Da Isoelectric Point: 8.4615
>T193667 WP_001384452.1 NZ_CP070286:11430-11708 [Escherichia albertii]
MEIFWTMLASQDRKRIREYIAEQNLMAAIELDERIGYSASSLAGQPYKGRNGRVEGTRELVIHPHFVLVYEVDSQWGKVY
ILRVLHTAQKWP
MEIFWTMLASQDRKRIREYIAEQNLMAAIELDERIGYSASSLAGQPYKGRNGRVEGTRELVIHPHFVLVYEVDSQWGKVY
ILRVLHTAQKWP
Download Length: 279 bp
>T193667 NZ_CP093068:c4374622-4374245 [Escherichia coli]
ATGAAAACATTACCCGACACGCATGTACGGGAGGTATCGTGCTGCCCGTCTCCAGTCACCATCTGGCAGACACTGCTCAC
CCGACTGCTGGGCCAGCACTACGGCCTTACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCAGTGAACTTTCTCGTGGAAAAATACGCACTGGTACGTACCGACCTGCCGGGATTC
AGCGCCTGTACCCACTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCCGGGCAACAGGCCTGATGATCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGGAAGCATCCGGAGGCGAAACGATGA
ATGAAAACATTACCCGACACGCATGTACGGGAGGTATCGTGCTGCCCGTCTCCAGTCACCATCTGGCAGACACTGCTCAC
CCGACTGCTGGGCCAGCACTACGGCCTTACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCAGTGAACTTTCTCGTGGAAAAATACGCACTGGTACGTACCGACCTGCCGGGATTC
AGCGCCTGTACCCACTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCCGGGCAACAGGCCTGATGATCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGGAAGCATCCGGAGGCGAAACGATGA
Antitoxin
Download Length: 90 a.a. Molecular weight: 10265.63 Da Isoelectric Point: 8.8736
>AT193667 WP_204620402.1 NZ_CP070286:11161-11430 [Escherichia albertii]
MAQVNMSLRIDAELKDAFMAAAKSMDRNGSQLIRDFMRQTVERQHNTWFRDQVEAGRQQLERGDVLPHNMVESSAAAWRD
EMSRKIAGK
MAQVNMSLRIDAELKDAFMAAAKSMDRNGSQLIRDFMRQTVERQHNTWFRDQVEAGRQQLERGDVLPHNMVESSAAAWRD
EMSRKIAGK
Download Length: 270 bp
>AT193667 NZ_CP093068:c4375080-4374712 [Escherichia coli]
GTGTCAGACACACTCTCCGGGACAACGCATCCCGATGACAATCACGACCATCCCTGGTGGGGACTACCCTGCACAGTGAC
GCCCTGTTTCGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGTGCCGGTATCAGAGGCCGGT
TCAGAGATGCGGATGCGTACCCTCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGAAATTAATGCTCACCAGTGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCGAAGGGGCTGACCTGTGAAGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACACCTGAAACGAAAAAGTAA
GTGTCAGACACACTCTCCGGGACAACGCATCCCGATGACAATCACGACCATCCCTGGTGGGGACTACCCTGCACAGTGAC
GCCCTGTTTCGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGTGCCGGTATCAGAGGCCGGT
TCAGAGATGCGGATGCGTACCCTCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGAAATTAATGCTCACCAGTGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCGAAGGGGCTGACCTGTGAAGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACACCTGAAACGAAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|