Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2026788..2027020 | Replicon | chromosome |
| Accession | NZ_CP070281 | ||
| Organism | Escherichia albertii strain Sample 170 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2026915..2027018 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2026788..2027020 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JRC42_RS09880 | 2023719..2024381 | - | 663 | WP_000944293.1 | exodeoxyribonuclease X | - |
| JRC42_RS09885 | 2024405..2024617 | - | 213 | Protein_1954 | carbon-nitrogen hydrolase family protein YobB | - |
| JRC42_RS09890 | 2024782..2025012 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| JRC42_RS09895 | 2025151..2025528 | + | 378 | WP_000741564.1 | CopC domain-containing protein YobA | - |
| JRC42_RS09900 | 2025532..2026404 | + | 873 | WP_059244199.1 | copper homeostasis membrane protein CopD | - |
| JRC42_RS09905 | 2026417..2026758 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 2026788..2027020 | - | 233 | - | - | Antitoxin |
| - | 2026915..2027018 | + | 104 | - | - | Toxin |
| JRC42_RS09910 | 2027640..2028218 | + | 579 | WP_149997555.1 | bfpT-regulated chaperone | - |
| JRC42_RS09915 | 2028675..2028839 | + | 165 | WP_157944741.1 | hypothetical protein | - |
| JRC42_RS09920 | 2029412..2029732 | + | 321 | WP_000086028.1 | hypothetical protein | - |
| JRC42_RS09925 | 2029805..2031262 | + | 1458 | WP_024165002.1 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T193609 NZ_CP070281:2026915-2027018 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT193609 NZ_CP070281:c2027020-2026788 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
