Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) sdenTA/AbiEii(toxin)
Location 3362866..3364282 Replicon chromosome
Accession NZ_CP070273
Organism Marinomonas foliarum strain JZW

Toxin (Protein)


Gene name sdenT Uniprot ID -
Locus tag JSY38_RS15620 Protein ID WP_205114041.1
Coordinates 3362866..3363756 (-) Length 297 a.a.

Antitoxin (Protein)


Gene name sdenA Uniprot ID -
Locus tag JSY38_RS15625 Protein ID WP_205114043.1
Coordinates 3363758..3364282 (-) Length 175 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JSY38_RS15605 3359313..3360188 - 876 WP_205116884.1 MBL fold metallo-hydrolase -
JSY38_RS15610 3360446..3361744 + 1299 WP_205116890.1 sigma 54-interacting transcriptional regulator -
JSY38_RS15615 3361893..3362546 + 654 WP_205114039.1 redoxin domain-containing protein -
JSY38_RS15620 3362866..3363756 - 891 WP_205114041.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin
JSY38_RS15625 3363758..3364282 - 525 WP_205114043.1 hypothetical protein Antitoxin
JSY38_RS15630 3365805..3367391 + 1587 WP_205116891.1 BCCT family transporter -
JSY38_RS15635 3367718..3368674 - 957 WP_110571597.1 sugar-binding transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(36-265)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 297 a.a.        Molecular weight: 34338.51 Da        Isoelectric Point: 5.9436

>T193600 WP_205114041.1 NZ_CP070273:c3363756-3362866 [Marinomonas foliarum]
MLKEVIKQIVNTNPEHAGITPVIEKEILHHDIMAVMVKQGVMQSLTFIGGTSLRLCHNSSRLSEDLDFNGGHDFKPDDFD
GLEVEIQKYIQKKYETEVWVNKPNQDKQGDTSSWKISIEKEANRPDLPRQKMHIDICAIPSFDIERRPLISHYDVVVPTE
GLLIPVQSLEETLADKFIALAYRSRRIKPRDVWDILWIKQRGIDVSIELINKKLAAREKTKANFIESLTLQVEKLLNEEE
VKADFNNEMSRFIPSQIKQRTIDNPEYWQYVQLEIKSMTDPILKPDLQTKKFDMGL

Download         Length: 891 bp

>T193600 NZ_CP093036:1000800-1001084 [Bartonella krasnovii]
ATGAAAATAACCCCATTTAAACCAGAAGAATATCTTAAAGACATTGAGTCACAGAAAATTTTTCTCAATGAAGCCCTTAA
AACCGGTGATGCCGCCCACATTGCCGATGCTCTTGGTATCGTTGCTCGTGCCCAAAATATGAGTGCCTTAGCAAAAGAAA
CCAATCGCGAACGCAGTGGATTATACCGTTCCTTAAGTAAAACGGGTGACCCAAAGCTTTCTACCTTAGTCGCTGTATTA
TCTGCCCTTAATTTACAACTCTCTGTACAATCTTCTACTTCATAA

Antitoxin


Download         Length: 175 a.a.        Molecular weight: 19314.40 Da        Isoelectric Point: 9.5611

>AT193600 WP_205114043.1 NZ_CP070273:c3364282-3363758 [Marinomonas foliarum]
MSKKEKLLSVLSDATKAGGGVHTSTEIAFMLGEKHTPAFTKFLTDCVKNGVLRRVATGIFESTITPPDGSTAIYKIVNKL
RGDVFNYISLESQLSYTGDISQIVMDRLTVMTKGRSGIFPTPYGVIEFTHTKKTIETIAPNIYFDSDIKMYRAKTIQALI
DLKNCNRNLHMLEA

Download         Length: 525 bp

>AT193600 NZ_CP093036:1000511-1000819 [Bartonella krasnovii]
ATGATACTCATTCATAAAACAATAGAATTTGATACTTGGCTTAAGAAACTTAAAGATAAAAGCGTTAAGGCTATTATTCT
TCAACGTGTTGTACGCTTAAAACAAGGACTTTTCGGTGATGTTAAATTCTTTCATGGCATAGGGGAATTACGTATCCACT
ATGGTGCTGGTTACAGAATTTATTTTACCCAAAAAGGCTCTGATTTTATCCTTTTGTTATGCGGTGGAGATAAATCAACG
CAGCAAAGAGATATTGAACAAGCGTTAAAATTAAAAGAGGAGTACAGTGATGAAAATAACCCCATTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References