Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1972867..1973138 | Replicon | chromosome |
| Accession | NZ_CP070232 | ||
| Organism | Escherichia coli strain 10R | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1972997..1973100 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1972867..1973138 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JTF63_RS09445 | 1969422..1970084 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JTF63_RS09450 | 1970108..1970764 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| JTF63_RS09455 | 1970866..1971096 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JTF63_RS09460 | 1971235..1971609 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JTF63_RS09465 | 1971613..1972485 | + | 873 | WP_039268383.1 | copper homeostasis membrane protein CopD | - |
| JTF63_RS09470 | 1972498..1972839 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1972867..1973138 | - | 272 | - | - | Antitoxin |
| - | 1972997..1973100 | + | 104 | - | - | Toxin |
| JTF63_RS09475 | 1973235..1973891 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| JTF63_RS09480 | 1973892..1974083 | - | 192 | WP_000457842.1 | YebW family protein | - |
| JTF63_RS09485 | 1974188..1974424 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| JTF63_RS09490 | 1974542..1975981 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T193581 NZ_CP070232:1972997-1973100 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT193581 NZ_CP070232:c1973138-1972867 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
