Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 206567..206835 | Replicon | chromosome |
| Accession | NZ_CP070229 | ||
| Organism | Escherichia coli strain EC12 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 206695..206797 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 206567..206835 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| JTC67_RS01180 | 203120..203782 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| JTC67_RS01185 | 203806..204462 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| JTC67_RS01190 | 204564..204794 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| JTC67_RS01195 | 204933..205307 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| JTC67_RS01200 | 205311..206183 | + | 873 | WP_001357781.1 | copper homeostasis membrane protein CopD | - |
| JTC67_RS01205 | 206196..206537 | + | 342 | WP_001357782.1 | YebY family protein | - |
| - | 206567..206835 | - | 269 | - | - | Antitoxin |
| - | 206695..206797 | + | 103 | - | - | Toxin |
| JTC67_RS01210 | 206932..207588 | + | 657 | WP_001357783.1 | protein-serine/threonine phosphatase | - |
| JTC67_RS01215 | 207589..207780 | - | 192 | WP_001357784.1 | YebW family protein | - |
| JTC67_RS01220 | 207885..208121 | - | 237 | WP_001295499.1 | YebV family protein | - |
| JTC67_RS01225 | 208239..209678 | - | 1440 | WP_053893972.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T193540 NZ_CP070229:206695-206797 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT193540 NZ_CP070229:c206835-206567 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
