Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2805743..2806011 Replicon chromosome
Accession NZ_CP070227
Organism Escherichia coli strain JA0072

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2805781..2805883 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2805743..2806011 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
JS570_RS13570 2802900..2804339 + 1440 WP_001704100.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
JS570_RS13575 2804457..2804693 + 237 WP_001295499.1 YebV family protein -
JS570_RS13580 2804798..2804989 + 192 WP_001317886.1 YebW family protein -
JS570_RS13585 2804990..2805646 - 657 WP_000812742.1 protein-serine/threonine phosphatase -
- 2805743..2806011 + 269 - - Antitoxin
- 2805781..2805883 - 103 - - Toxin
JS570_RS13590 2806041..2806382 - 342 WP_000976472.1 YebY family protein -
JS570_RS13595 2806395..2807267 - 873 WP_000879320.1 copper homeostasis membrane protein CopD -
JS570_RS13600 2807271..2807645 - 375 WP_000168747.1 CopC domain-containing protein YobA -
JS570_RS13605 2807784..2808014 + 231 WP_000916763.1 DNA polymerase III subunit theta -
JS570_RS13610 2808116..2808772 + 657 WP_000011664.1 carbon-nitrogen hydrolase family protein YobB -
JS570_RS13615 2808795..2809457 + 663 WP_000944256.1 exodeoxyribonuclease X -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 103 bp

>T193526 NZ_CP070227:c2805883-2805781 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 269 bp

>AT193526 NZ_CP070227:2805743-2806011 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCTAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References