Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 2805743..2806011 | Replicon | chromosome |
Accession | NZ_CP070227 | ||
Organism | Escherichia coli strain JA0072 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 2805781..2805883 (-) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 2805743..2806011 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JS570_RS13570 | 2802900..2804339 | + | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
JS570_RS13575 | 2804457..2804693 | + | 237 | WP_001295499.1 | YebV family protein | - |
JS570_RS13580 | 2804798..2804989 | + | 192 | WP_001317886.1 | YebW family protein | - |
JS570_RS13585 | 2804990..2805646 | - | 657 | WP_000812742.1 | protein-serine/threonine phosphatase | - |
- | 2805743..2806011 | + | 269 | - | - | Antitoxin |
- | 2805781..2805883 | - | 103 | - | - | Toxin |
JS570_RS13590 | 2806041..2806382 | - | 342 | WP_000976472.1 | YebY family protein | - |
JS570_RS13595 | 2806395..2807267 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
JS570_RS13600 | 2807271..2807645 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
JS570_RS13605 | 2807784..2808014 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
JS570_RS13610 | 2808116..2808772 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
JS570_RS13615 | 2808795..2809457 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T193526 NZ_CP070227:c2805883-2805781 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT193526 NZ_CP070227:2805743-2806011 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCTAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCTAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT