Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2122656..2122924 | Replicon | chromosome |
| Accession | NZ_CP070170 | ||
| Organism | Escherichia coli strain FDAARGOS_1284 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2122784..2122886 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2122656..2122924 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K14_RS09880 | 2119209..2119871 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| I6K14_RS09885 | 2119895..2120551 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| I6K14_RS09890 | 2120653..2120883 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| I6K14_RS09895 | 2121022..2121396 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| I6K14_RS09900 | 2121400..2122272 | + | 873 | WP_087598017.1 | copper homeostasis membrane protein CopD | - |
| I6K14_RS09905 | 2122285..2122626 | + | 342 | WP_001357782.1 | YebY family protein | - |
| - | 2122656..2122924 | - | 269 | - | - | Antitoxin |
| - | 2122784..2122886 | + | 103 | - | - | Toxin |
| I6K14_RS09910 | 2123021..2123677 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| I6K14_RS09915 | 2123678..2123869 | - | 192 | WP_024186842.1 | YebW family protein | - |
| I6K14_RS09920 | 2123974..2124210 | - | 237 | WP_001295499.1 | YebV family protein | - |
| I6K14_RS09925 | 2124329..2125768 | - | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T193466 NZ_CP070170:2122784-2122886 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT193466 NZ_CP070170:c2122924-2122656 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
