Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 684482..684627 | Replicon | chromosome |
| Accession | NZ_CP070169 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_1320 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 684518..684620 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 684482..684627 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6K50_RS03085 | 679612..681672 | + | 2061 | WP_032419805.1 | oligopeptidase B | - |
| I6K50_RS03090 | 681676..682335 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| I6K50_RS03095 | 682414..682644 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| I6K50_RS03100 | 682757..683131 | + | 375 | WP_020316569.1 | CopC domain-containing protein YobA | - |
| I6K50_RS03105 | 683135..684004 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| I6K50_RS03110 | 684021..684359 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 684482..684627 | - | 146 | - | - | Antitoxin |
| - | 684518..684620 | + | 103 | - | - | Toxin |
| I6K50_RS03115 | 684995..685138 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| I6K50_RS03120 | 685243..686211 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| I6K50_RS03125 | 686368..687021 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| I6K50_RS03130 | 687018..687209 | - | 192 | WP_002911395.1 | YebW family protein | - |
| I6K50_RS03135 | 687307..687546 | - | 240 | WP_002911393.1 | YebV family protein | - |
| I6K50_RS03140 | 687662..689095 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T193443 NZ_CP070169:684518-684620 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT193443 NZ_CP070169:c684627-684482 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
